Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 4.4e-147 524.6 268 100.0
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 8.3e-130 467.2 269 89.6
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 9.5e-110 400.6 259 78.8
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 6.2e-109 397.9 269 76.6
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 3.6e-85 318.9 259 66.0
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.8e-85 318.5 264 65.9
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 2.6e-83 312.8 271 63.1
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.3e-82 310.5 280 61.4
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.7e-82 310.1 259 63.3
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.4e-82 308.1 259 62.9
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 4.2e-81 305.4 272 63.2
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 9.3e-81 304.3 275 60.7
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 7.9e-80 301.2 260 62.3
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 1.0e-79 300.8 266 58.6
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 2.3e-79 299.7 261 60.9
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 2.3e-79 299.7 263 63.9
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 8.7e-79 297.7 266 60.5
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.9e-78 296.6 271 59.8
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 6.2e-77 291.6 268 60.1
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 8.1e-77 291.2 266 59.8
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 2.4e-76 289.7 262 61.1
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 3.1e-76 289.3 262 61.8
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.2e-75 287.3 263 61.2
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 1.2e-75 287.3 262 61.1
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 2.0e-75 286.6 260 58.8
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 2.6e-75 286.2 263 59.3
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 3.4e-75 285.8 276 56.5
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 7.6e-75 284.6 263 60.8
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.3e-74 283.9 263 60.1
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.2e-74 283.1 264 58.7
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 2.2e-74 283.1 258 60.5
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.2e-74 283.1 258 60.5
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.2e-74 283.1 258 60.5
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 4.9e-74 282.0 265 59.2
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 4.9e-74 282.0 266 56.0
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 4.9e-74 282.0 258 60.5
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.4e-73 280.4 268 59.7
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 4.2e-73 278.9 277 54.9
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 7.9e-72 274.6 260 57.3
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 1.3e-71 273.9 272 55.9
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.9e-71 272.3 260 56.5
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.1e-70 270.8 258 57.4
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 7.4e-70 268.1 263 56.7
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.1e-69 266.5 240 60.0
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 8.2e-69 264.6 259 55.6
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 1.4e-68 263.8 263 57.0
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 2.4e-68 263.1 275 56.0
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.4e-67 259.2 224 63.4
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.0e-66 257.7 224 62.9
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 2.9e-66 256.1 256 53.5
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 6.5e-66 255.0 263 55.1
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 1.9e-65 253.4 264 54.5
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 4.2e-65 252.3 257 55.3
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 1.6e-64 250.4 261 55.2
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 2.7e-64 249.6 261 54.8
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 4.6e-64 248.8 266 53.4
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.0e-64 248.4 267 51.3
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 1.0e-63 247.7 268 51.1
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.0e-63 246.1 265 50.9
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 8.7e-63 244.6 266 51.1
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.1e-62 244.2 265 50.6
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.5e-62 243.8 267 50.9
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 4.3e-62 242.3 264 53.0
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 5.7e-62 241.9 268 50.0
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 9.7e-62 241.1 267 50.2
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 1.3e-61 240.7 258 51.2
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 1.6e-61 240.4 273 49.1
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 3.7e-61 239.2 258 53.1
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 4.8e-61 238.8 256 51.2
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 5.3e-60 235.3 224 58.0
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 5.9e-59 231.9 257 51.4
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.7e-58 230.3 255 53.7
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.7e-58 230.3 260 50.8
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 2.9e-58 229.6 274 47.1
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 3.8e-58 229.2 264 48.9
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 6.5e-58 228.4 262 50.4
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.1e-57 227.6 258 50.0
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.4e-57 227.3 258 51.6
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 1.9e-57 226.9 261 48.3
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 1.2e-56 224.2 261 48.3
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 3.0e-55 219.5 254 50.4
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 3.0e-55 219.5 264 46.2
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 3.9e-55 219.2 261 50.6
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 1.5e-54 217.2 254 47.2
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 2.0e-54 216.9 262 48.9
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.3e-54 216.1 200 56.5
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.7e-54 215.3 275 45.1
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 5.7e-54 215.3 275 45.1
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 7.4e-54 214.9 261 49.0
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 7.4e-54 214.9 256 46.1
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 1.7e-53 213.8 258 50.4
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 2.8e-53 213.0 170 62.9
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.8e-52 210.3 202 55.9
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 1.8e-52 210.3 191 56.5
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 2.4e-52 209.9 261 45.2
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 3.1e-52 209.5 259 47.5
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 1.5e-51 207.2 261 47.5
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 1.5e-51 207.2 261 47.5
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 2.0e-51 206.8 261 47.5
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 2.6e-51 206.5 258 46.9
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 4.5e-51 205.7 260 47.7
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.5e-51 205.7 266 45.1
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.5e-51 205.7 266 45.1
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 4.5e-51 205.7 253 51.0
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 5.9e-51 205.3 259 46.7
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 5.9e-51 205.3 263 46.8
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 1.3e-50 204.1 261 46.0
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.7e-50 203.8 269 46.1
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 2.9e-50 203.0 261 46.0
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 3.8e-50 202.6 261 47.9
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 3.8e-50 202.6 260 45.0
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 1.1e-49 201.1 254 48.4
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.4e-49 200.7 259 46.3
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.4e-49 200.7 262 47.3
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 3.2e-49 199.5 260 43.8
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 9.4e-49 198.0 269 43.9
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.6e-48 196.1 261 43.3
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 4.7e-48 195.7 255 46.3
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 6.1e-48 195.3 256 48.4
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 7.9e-48 194.9 266 42.5
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 5.1e-47 192.2 258 42.6
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 5.1e-47 192.2 259 44.4
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.4e-46 189.1 262 43.9
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.7e-45 187.2 255 45.5
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 2.8e-45 186.4 261 44.8
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 1.1e-44 184.5 171 56.1
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 9.1e-44 181.4 265 42.3
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 9.1e-44 181.4 251 43.4
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 1.5e-43 180.6 171 55.0
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.0e-43 180.3 214 49.5
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.0e-43 180.3 214 49.5
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.2e-42 176.8 196 50.0
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 2.9e-42 176.4 256 42.6
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 1.9e-41 173.7 266 40.6
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 4.2e-41 172.6 251 41.0
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.9e-39 166.0 116 66.4
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.4e-38 161.8 210 48.1
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 7.4e-38 161.8 158 50.0
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 1.7e-37 160.6 143 55.9
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 2.8e-37 159.8 280 39.3
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 8.2e-37 158.3 178 49.4
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.4e-36 157.5 117 63.2
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.2e-35 154.5 150 52.0
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.6e-35 154.1 99 75.8
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 1.0e-34 151.4 141 55.3
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 1.7e-29 134.0 164 51.8
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.3e-28 129.0 131 50.4
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 1.7e-21 107.5 115 45.2
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.4e-20 104.4 82 65.9
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 1.4e-20 104.4 123 43.1
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 7.7e-19 98.6 275 31.6
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 1.5e-14 84.3 289 26.6
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 5.7e-14 82.4 96 43.8
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 1.4e-12 77.8 95 41.1
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 2.4e-12 77.0 178 33.1
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.6e-11 74.3 70 52.9
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 2.0e-11 73.9 104 32.7
SEGI_07745 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 2.3e-07 60.5 278 27.0


User provided reference genes

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