Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 3.5e-189 664.8 344 100.0
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 6.6e-156 554.3 344 86.0
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.8e-154 548.9 344 85.2
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.3e-146 523.5 344 82.8
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 5.3e-137 491.5 344 74.4
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 9.0e-137 490.7 344 74.1
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 3.8e-135 485.3 345 75.7
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 3.0e-132 475.7 345 73.9
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 9.6e-131 470.7 344 72.4
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 9.6e-131 470.7 344 71.8
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.1e-129 467.2 343 70.8
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.1e-129 467.2 344 70.3
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 1.2e-128 463.8 344 69.5
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.0e-128 463.0 344 69.2
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 2.6e-128 462.6 345 72.8
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.4e-128 462.2 344 68.9
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 7.6e-128 461.1 342 71.3
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.3e-127 460.3 342 71.1
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.7e-127 459.9 345 71.0
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.9e-127 459.1 334 72.8
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 2.9e-127 459.1 344 68.6
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 3.8e-127 458.8 344 68.9
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 3.8e-127 458.8 344 69.8
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 8.4e-127 457.6 344 70.3
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.2e-126 455.7 344 70.1
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.2e-126 455.7 344 70.1
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 9.3e-126 454.1 344 68.3
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 6.0e-125 451.4 344 68.0
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 7.9e-125 451.1 337 71.2
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.8e-124 449.9 336 69.9
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 2.3e-124 449.5 344 67.4
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 2.3e-124 449.5 344 68.3
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.9e-124 448.7 344 68.9
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.9e-124 448.7 344 68.6
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.7e-124 448.0 344 68.6
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 6.7e-124 448.0 336 69.3
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.1e-123 447.2 336 71.4
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.5e-123 446.8 344 68.6
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 1.5e-123 446.8 344 68.0
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.5e-123 446.8 347 68.3
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 9.6e-123 444.1 405 61.0
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.6e-122 443.4 344 66.3
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 2.1e-122 443.0 335 68.7
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 1.4e-121 440.3 335 68.7
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 1.8e-121 439.9 344 67.2
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 3.1e-121 439.1 335 69.6
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 3.1e-121 439.1 367 63.2
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 2.0e-120 436.4 335 68.1
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.0e-120 436.4 348 68.1
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 3.4e-120 435.6 344 65.1
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 7.6e-120 434.5 344 67.2
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 7.6e-120 434.5 348 67.2
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.3e-119 433.7 344 66.6
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 2.2e-119 433.0 333 70.0
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 3.8e-119 432.2 344 66.3
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 5.0e-119 431.8 332 67.8
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 5.0e-119 431.8 338 66.6
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 5.0e-119 431.8 344 67.2
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.1e-118 430.6 339 69.3
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 1.9e-118 429.9 344 65.7
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 2.5e-118 429.5 344 66.3
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.2e-118 428.7 347 65.7
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 1.6e-117 426.8 346 64.7
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 2.7e-117 426.0 344 65.4
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 2.7e-117 426.0 338 66.6
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 3.5e-117 425.6 381 61.2
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 3.5e-117 425.6 340 67.4
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 7.9e-117 424.5 344 65.4
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 3.9e-116 422.2 345 63.8
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 5.1e-116 421.8 347 65.1
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 8.7e-116 421.0 362 62.7
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 1.1e-115 420.6 344 64.8
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.9e-115 419.9 344 64.5
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 2.5e-115 419.5 344 64.2
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 5.7e-115 418.3 344 64.5
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 5.7e-115 418.3 353 64.0
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 7.4e-115 417.9 344 64.2
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 7.4e-115 417.9 337 64.7
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 7.4e-115 417.9 350 64.6
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 1.3e-114 417.2 348 64.4
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 1.6e-114 416.8 345 64.3
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 1.6e-114 416.8 344 64.0
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 2.2e-114 416.4 335 65.4
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 3.7e-114 415.6 349 63.6
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.7e-114 415.6 345 63.5
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 4.8e-114 415.2 345 65.5
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 6.3e-114 414.8 336 65.5
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 1.1e-113 414.1 344 63.7
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.1e-113 414.1 310 69.0
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.4e-113 413.7 348 63.5
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.8e-113 413.3 333 64.6
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.1e-113 412.5 333 65.5
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 9.0e-113 411.0 333 64.0
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.2e-112 410.6 344 63.4
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.5e-112 410.2 344 63.4
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.0e-112 409.8 337 64.4
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 3.4e-112 409.1 337 62.9
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 4.5e-112 408.7 350 63.4
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.0e-111 407.5 341 65.1
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.0e-111 407.5 326 65.3
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.0e-111 407.5 331 64.0
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.3e-111 407.1 345 64.1
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.7e-111 406.8 341 64.8
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.2e-111 406.4 274 76.3
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 2.2e-111 406.4 346 62.7
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 1.9e-110 403.3 331 63.1
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.2e-110 401.4 345 63.8
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.2e-109 400.6 276 72.5
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.6e-109 400.2 343 61.5
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.6e-109 400.2 326 63.8
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.4e-108 397.1 339 63.4
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.0e-108 396.0 342 61.4
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 3.3e-107 392.5 301 66.8
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 4.3e-107 392.1 309 68.0
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 7.4e-107 391.3 341 63.6
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 7.4e-107 391.3 350 62.6
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.3e-106 390.6 342 60.8
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 2.2e-106 389.8 337 61.4
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 2.0e-104 383.3 337 62.6
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.1e-102 377.5 310 62.6
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 4.7e-101 372.1 340 58.2
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.8e-97 360.1 334 57.8
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.8e-97 360.1 335 58.5
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 4.5e-96 355.5 340 57.6
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 2.2e-95 353.2 340 54.4
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 2.9e-95 352.8 264 69.7
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.5e-95 351.3 322 58.4
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.5e-94 350.5 350 56.9
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 9.1e-89 331.3 271 65.3
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 4.5e-88 328.9 309 54.4
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.2e-86 321.6 245 69.4
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.6e-80 303.9 312 49.7
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 2.3e-76 290.0 311 47.9
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 6.8e-76 288.5 346 47.4
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 2.6e-75 286.6 321 47.4
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 3.4e-75 286.2 346 47.7
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 2.8e-74 283.1 322 52.5
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 4.1e-73 279.3 281 55.2
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.5e-72 275.8 319 47.6
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 3.8e-71 272.7 198 70.7
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 2.1e-69 266.9 320 45.0
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.8e-69 266.5 218 62.8
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 4.7e-69 265.8 320 44.7
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 2.3e-68 263.5 308 46.4
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 3.0e-68 263.1 261 54.4
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.9e-66 255.8 337 47.2
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 8.6e-63 245.0 214 62.1
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.2e-61 241.1 270 48.1
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 8.3e-58 228.4 203 59.6
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 1.4e-57 227.6 152 74.3
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 3.5e-56 223.0 163 68.7
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 2.8e-53 213.4 222 48.6
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 5.2e-52 209.1 198 57.1
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 2.4e-49 200.3 254 44.1
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 5.6e-46 189.1 153 64.1
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.2e-43 181.4 325 34.2
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 3.0e-31 140.2 274 33.2
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 2.2e-26 124.0 128 53.1
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 2.1e-24 117.5 353 26.6
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 5.1e-23 112.8 285 29.1
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.6e-23 112.5 89 66.3
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 2.5e-22 110.5 112 49.1
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.6e-21 107.8 137 46.7
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 6.2e-21 105.9 290 28.6
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 6.0e-16 89.4 264 29.2
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.5e-11 73.2 199 34.2
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 1.1e-06 58.5 76 39.5
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 4.3e-06 56.6 65 47.7


User provided reference genes

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