Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0168700 Salix brachista HOM05D000604 ORTHO05D004512 1.7e-99 365.9 173 100.0
Potri.008G043600 Populus trichocarpa HOM05D000604 ORTHO05D004512 8.4e-59 230.7 217 57.6
Sabra08G0030100 Salix brachista HOM05D000604 ORTHO05D004512 6.7e-56 221.1 244 52.0
Manes.08G028200 Manihot esculenta HOM05D000604 ORTHO05D004512 8.7e-56 220.7 217 54.8
ClCG03G016990 Citrullus lanatus HOM05D000604 ORTHO05D004512 8.2e-54 214.2 218 53.7
CsaV3_1G038950 Cucumis sativus L. HOM05D000604 ORTHO05D004512 1.1e-53 213.8 218 53.7
GSVIVG01020870001 Vitis vinifera HOM05D000604 ORTHO05D004512 5.3e-53 211.5 218 52.8
Glyma.10G158100 Glycine max HOM05D000604 ORTHO05D004512 1.2e-52 210.3 217 52.1
Duzib128G0428 Durio zibethinus HOM05D000604 ORTHO05D004512 1.5e-52 209.9 218 53.2
TWI38G0373 Tripterygium wilfordii HOM05D000604 ORTHO05D004512 2.0e-52 209.5 217 52.5
Sed0027198 Sechium edule HOM05D000604 ORTHO05D004512 2.6e-52 209.1 218 52.3
BolC7t42325H Brassica oleracea HOM05D000604 ORTHO05D004512 4.5e-52 208.4 229 51.5
Lj3g0003298 Lotus japonicus HOM05D000604 ORTHO05D004512 4.5e-52 208.4 217 51.2
SHI08941 Sapria himalayana HOM05D000604 ORTHO05D004512 4.5e-52 208.4 219 52.1
C07p18150 Brassica napus HOM05D000604 ORTHO05D004512 5.8e-52 208.0 227 51.5
Haze_25104 Corylus avellana HOM05D000258 ORTHO05D000153 7.6e-52 207.6 218 52.8
A07p12190 Brassica napus HOM05D000604 ORTHO05D004512 1.0e-51 207.2 218 52.3
BraA07t29003Z Brassica rapa HOM05D000604 ORTHO05D004512 1.0e-51 207.2 218 52.3
Ca_02808_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004512 1.0e-51 207.2 218 52.3
Eucgr.H04430 Eucalyptus grandis HOM05D000604 ORTHO05D004512 1.3e-51 206.8 217 53.0
CSS0015734 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 1.7e-51 206.5 218 51.4
CSS0048299 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 1.7e-51 206.5 218 51.4
Cfa002807 Carpinus fangiana HOM05D000604 ORTHO05D004512 1.7e-51 206.5 218 52.3
CiPaw.02G127200 Carya illinoinensis HOM05D000604 ORTHO05D004512 1.7e-51 206.5 218 52.8
Thhalv10007728m.g Eutrema salsugineum HOM05D000604 ORTHO05D004512 1.7e-51 206.5 218 52.3
Nn3g21243 Nelumbo nucifera HOM05D000604 ORTHO05D004512 1.7e-51 206.5 218 51.4
Sp4g07260 Schrenkiella parvula HOM05D000604 ORTHO05D004512 1.7e-51 206.5 218 52.8
AL4G19120 Arabidopsis lyrata HOM05D000604 ORTHO05D004512 2.2e-51 206.1 218 52.3
Lalb_Chr21g0310821 Lupinus albus HOM05D000604 ORTHO05D004512 2.2e-51 206.1 217 51.6
THA.LOC104826738 Tarenaya hassleriana HOM05D000604 ORTHO05D004512 2.2e-51 206.1 218 52.3
VMungo0720G1625 Vigna mungo HOM05D000604 ORTHO05D004512 2.2e-51 206.1 217 51.2
QL06p022999 Quercus lobata HOM05D000604 ORTHO05D004512 2.9e-51 205.7 218 52.3
CSS0037056 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 3.8e-51 205.3 218 50.9
Phvul.007G183500 Phaseolus vulgaris HOM05D000604 ORTHO05D004512 5.0e-51 204.9 217 51.2
arahy.Tifrunner.gnm1.ann1.LQ82RV Arachis hypogaea HOM05D000604 ORTHO05D004512 6.5e-51 204.5 218 51.8
Glyma.20G230500 Glycine max HOM05D000604 ORTHO05D004512 6.5e-51 204.5 217 51.2
FAN14G1953 Fragaria x ananassa HOM05D000604 ORTHO05D004512 8.4e-51 204.1 193 54.9
Carub.0004s0633 Capsella rubella HOM05D000604 ORTHO05D004512 1.1e-50 203.8 218 51.4
CANSAT01G1793 Cannabis sativa HOM05D000604 ORTHO05D004512 1.4e-50 203.4 219 51.1
Gohir.D01G117700 Gossypium hirsutum HOM05D000604 ORTHO05D004512 1.4e-50 203.4 214 52.8
Gorai.002G143200 Gossypium raimondii HOM05D000604 ORTHO05D004512 1.4e-50 203.4 214 52.8
Prupe.6G333200 Prunus persica HOM05D000604 ORTHO05D004512 1.4e-50 203.4 215 51.6
Thecc.10G069000 Theobroma cacao HOM05D000604 ORTHO05D004512 1.4e-50 203.4 218 52.3
TAR633G1789 Trochodendron aralioides HOM05D000604 ORTHO05D004512 1.4e-50 203.4 214 51.4
TAR633G2382 Trochodendron aralioides HOM05D000604 ORTHO05D004512 1.4e-50 203.4 214 51.4
CARHR118360 Cardamine hirsuta HOM05D000604 ORTHO05D004512 1.9e-50 203.0 220 51.4
Gohir.A01G133500 Gossypium hirsutum HOM05D000604 ORTHO05D004512 1.9e-50 203.0 215 52.6
Aa31LG5G9440 Aethionema arabicum HOM05D000604 ORTHO05D004512 2.5e-50 202.6 212 52.4
Rhsim05G0146600 Rhododendron simsii HOM05D000604 ORTHO05D004512 2.5e-50 202.6 218 50.0
CANSAT54G2755 Cannabis sativa HOM05D000604 ORTHO05D004512 3.2e-50 202.2 219 50.7
PGR031G1961 Punica granatum HOM05D000604 ORTHO05D004512 3.2e-50 202.2 217 51.6
TPR.G6694 Trifolium pratense HOM05D000604 ORTHO05D004512 3.2e-50 202.2 218 50.5
AT2G26430 Arabidopsis thaliana HOM05D000604 ORTHO05D004512 4.2e-50 201.8 218 51.8
Ciclev10031535m.g Citrus clementina HOM05D000604 ORTHO05D004512 4.2e-50 201.8 218 51.4
Dinv01785 Davidia involucrata HOM05D000604 ORTHO05D004512 4.2e-50 201.8 218 50.9
Aqoxy1G02180 Aquilegia oxysepala HOM05D000604 ORTHO05D004512 5.5e-50 201.4 219 49.8
Medtr5g055170 Medicago truncatula HOM05D000604 ORTHO05D004512 5.5e-50 201.4 216 51.9
Nn4g26073 Nelumbo nucifera HOM05D000604 ORTHO05D004512 9.3e-50 200.7 218 50.0
CiPaw.01G204800 Carya illinoinensis HOM05D000604 ORTHO05D004512 1.2e-49 200.3 218 51.8
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 1.2e-49 200.3 218 50.0
Sp1g23300 Schrenkiella parvula HOM05D000604 ORTHO05D004512 1.2e-49 200.3 218 50.9
vmacro19657 Vaccinium macrocarpon HOM05D000604 ORTHO05D004512 1.2e-49 200.3 218 50.0
EL10Ac4g09280 Beta vulgaris HOM05D000604 ORTHO05D004512 1.6e-49 199.9 219 49.3
arahy.Tifrunner.gnm1.ann1.EVL1N6 Arachis hypogaea HOM05D000604 ORTHO05D004512 2.1e-49 199.5 218 50.9
Peaxi162Scf00225g00622 Petunia axillaris HOM05D000604 ORTHO05D004512 2.1e-49 199.5 218 49.5
RcHm_v2.0_Chr3g0453411 Rosa chinensis HOM05D000604 ORTHO05D004512 2.1e-49 199.5 218 50.0
Solyc01g098350.3 Solanum lycopersicum HOM05D000604 ORTHO05D004512 2.1e-49 199.5 218 49.5
Sopen01g041910 Solanum pennellii HOM05D000604 ORTHO05D004512 2.1e-49 199.5 218 49.5
PGSC0003DMG400022453 Solanum tuberosum HOM05D000604 ORTHO05D004512 2.1e-49 199.5 218 49.5
MD12G1227500 Malus domestica HOM05D000604 ORTHO05D004512 2.7e-49 199.1 218 50.9
MD04G1213300 Malus domestica HOM05D000604 ORTHO05D004512 3.5e-49 198.7 218 50.9
Nitab4.5_0001165g0020 Nicotiana tabacum HOM05D000604 ORTHO05D004512 3.5e-49 198.7 224 49.1
Actinidia28390 Actinidia chinensis HOM05D000604 ORTHO05D004512 4.6e-49 198.4 217 49.8
Aqoxy3G00886 Aquilegia oxysepala HOM05D000604 ORTHO05D004512 7.9e-49 197.6 215 49.3
Lj9A677G36 Lonicera japonica HOM05D000604 ORTHO05D004512 7.9e-49 197.6 220 48.6
Hma1.2p1_0071F.1_g037955 Hydrangea macrophylla HOM05D000604 ORTHO05D004512 1.0e-48 197.2 218 50.5
Medtr5g010140 Medicago truncatula HOM05D000604 ORTHO05D004512 1.0e-48 197.2 218 49.1
Hund07022 Selenicereus undatus HOM05D000604 ORTHO05D004512 1.3e-48 196.8 215 49.8
DCAR_020452 Daucus carota HOM05D000604 ORTHO05D004512 2.3e-48 196.1 214 50.5
HanXRQChr15g0464271 Helianthus annuus HOM05D000604 ORTHO05D004512 3.0e-48 195.7 218 47.7
Hma1.2p1_0702F.1_g206100 Hydrangea macrophylla HOM05D000604 ORTHO05D004512 3.0e-48 195.7 218 49.1
Sc16g0008250 Simmondsia chinensis HOM05D000604 ORTHO05D004512 3.0e-48 195.7 219 49.3
Cpa.g.sc81.66 Carica papaya HOM05D000604 ORTHO05D004512 3.9e-48 195.3 218 49.5
Migut.J00575 Erythranthe guttata HOM05D000604 ORTHO05D004512 6.7e-48 194.5 218 48.6
FAN05G3414 Fragaria x ananassa HOM05D000604 ORTHO05D004512 6.7e-48 194.5 218 48.6
FAN05G3826 Fragaria x ananassa HOM05D000604 ORTHO05D004512 6.7e-48 194.5 218 48.6
PSO161G0104 Papaver somniferum HOM05D000604 ORTHO05D004512 6.7e-48 194.5 219 50.2
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 8.7e-48 194.1 149 63.8
FAN09G4787 Fragaria x ananassa HOM05D000604 ORTHO05D004512 8.7e-48 194.1 218 48.2
Ca_14509_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004512 1.1e-47 193.7 247 45.7
COL.COLO4_23726 Corchorus olitorius HOM05D000604 ORTHO05D004512 1.1e-47 193.7 220 51.8
Nitab4.5_0000245g0230 Nicotiana tabacum HOM05D000604 ORTHO05D004512 1.5e-47 193.4 241 46.1
Atru.chr12.650 Acer truncatum HOM05D000604 ORTHO05D004512 2.5e-47 192.6 218 50.5
Atru.chr12.677 Acer truncatum HOM05D000604 ORTHO05D004512 2.5e-47 192.6 218 50.5
FvH4_6g04870 Fragaria vesca HOM05D000604 ORTHO05D004512 2.5e-47 192.6 214 49.1
Lsat_1_v5_gn_9_71340 Lactuca sativa HOM05D002827 ORTHO05D004512 2.5e-47 192.6 218 48.2
QL07p023602 Quercus lobata HOM05D000604 ORTHO05D004512 2.5e-47 192.6 218 50.0
MSTRG.18261 Avicennia marina HOM05D000604 ORTHO05D004512 4.3e-47 191.8 222 47.7
Cc02_g32830 Coffea canephora HOM05D000604 ORTHO05D004512 7.4e-47 191.0 215 49.8
Oeu028231.1 Olea europaea HOM05D000604 ORTHO05D004512 7.4e-47 191.0 218 48.6
ECA232G0151 Erigeron canadensis HOM05D000604 ORTHO05D004512 1.3e-46 190.3 214 48.1
CAN.G134.221 Capsicum annuum HOM05D000604 ORTHO05D004512 1.6e-46 189.9 218 47.2
SGA_v2.0_scaffold192G40625 Striga asiatica HOM05D000604 ORTHO05D004512 1.6e-46 189.9 211 48.8
AUR62005070 Chenopodium quinoa HOM05D000604 ORTHO05D004512 2.4e-45 186.0 220 47.7
Prupe.7G087700 Prunus persica HOM05D000604 ORTHO05D004512 2.4e-45 186.0 218 48.2
AUR62000905 Chenopodium quinoa HOM05D000604 ORTHO05D004512 5.3e-45 184.9 220 47.3
VMungo0720G1622 Vigna mungo HOM05D000604 ORTHO05D004512 5.3e-45 184.9 223 45.7
SalBow6G2614 Salvia bowleyana HOM05D000604 ORTHO05D004512 6.9e-45 184.5 199 49.2
Oeu026653.1 Olea europaea HOM05D000604 ORTHO05D004512 9.0e-45 184.1 153 58.8
CDE11G1039 Ceratophyllum demersum HOM05D000604 ORTHO05D004512 1.5e-44 183.3 198 49.0
unitig_750.g28505 Utricularia gibba HOM05D000604 ORTHO05D004512 2.0e-44 183.0 212 47.6
CDE05G3027 Ceratophyllum demersum HOM05D000604 ORTHO05D004512 2.6e-44 182.6 198 48.5
MBI18_g38867_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D004512 7.7e-44 181.0 167 55.1
ATR0706G007 Amborella trichopoda HOM05D000604 ORTHO05D004512 3.8e-43 178.7 227 46.3
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 3.8e-43 178.7 211 48.3
HPP92_017559 Vanilla planifolia HOM05D000604 ORTHO05D004512 7.2e-42 174.5 214 44.4
FAN02G4461 Fragaria x ananassa HOM05D000604 ORTHO05D004512 1.2e-41 173.7 144 58.3
SMO171G0100 Selaginella moellendorffii HOM05D000604 ORTHO05D004512 1.6e-41 173.3 176 48.9
Thhalv10027406m.g Eutrema salsugineum HOM05D000604 ORTHO05D004512 2.1e-41 172.9 197 49.2
Migut.N00466 Erythranthe guttata HOM05D000604 ORTHO05D004512 6.7e-40 167.9 198 46.0
Lj6P238T8 Lonicera japonica HOM05D000604 ORTHO05D004512 2.5e-39 166.0 198 46.0
AagrBONN_evm.TU.Sc2ySwM_344.3972 Anthoceros agrestis HOM05D000604 ORTHO05D004512 8.2e-38 161.0 198 42.9
Zm00001eb307170 Zea mays HOM05D000604 ORTHO05D004512 1.1e-37 160.6 211 42.2
A09p38800 Brassica napus HOM05D000604 ORTHO05D004512 1.4e-37 160.2 129 60.5
Zm00001eb048550 Zea mays HOM05D000604 ORTHO05D004512 9.1e-37 157.5 211 41.7
Os01g0377500 Oryza sativa ssp. japonica HOM05D000604 ORTHO05D004512 1.2e-36 157.1 210 41.9
Peaxi162Scf00202g00034 Petunia axillaris HOM05D000604 ORTHO05D004512 5.9e-36 154.8 189 45.5
Peaxi162Scf00132g00024 Petunia axillaris HOM05D000604 ORTHO05D004512 1.0e-35 154.1 213 42.3
Peaxi162Scf00690g00025 Petunia axillaris HOM05D003992 ORTHO05D004329 1.9e-34 149.8 185 43.8
C05p25700 Brassica napus HOM05D000604 ORTHO05D004512 5.5e-34 148.3 168 50.6
Lsat_1_v5_gn_8_124580 Lactuca sativa HOM05D000604 ORTHO05D004512 5.5e-34 148.3 208 39.9
SEGI_04759 Sequoiadendron giganteum HOM05D000604 ORTHO05D004512 5.5e-34 148.3 122 54.9
Lj6A239T12 Lonicera japonica HOM05D000604 ORTHO05D004512 9.4e-34 147.5 160 51.2
Lsat_1_v5_gn_0_34680 Lactuca sativa HOM05D000604 ORTHO05D004512 1.6e-33 146.7 218 38.1
Lsat_1_v5_gn_8_124560 Lactuca sativa HOM05D000604 ORTHO05D004512 1.6e-33 146.7 208 39.9
Mapoly0037s0071 Marchantia polymorpha HOM05D000604 ORTHO05D004512 3.6e-33 145.6 200 42.5
FAN14G1660 Fragaria x ananassa HOM05D000604 ORTHO05D004512 1.8e-32 143.3 218 42.2
FAN14G4098 Fragaria x ananassa HOM05D000604 ORTHO05D004512 1.8e-32 143.3 218 42.2
Psat2g184680 Pisum sativum HOM05D000604 ORTHO05D004512 3.0e-32 142.5 181 44.8
Pp3c9_26180 Physcomitrium patens HOM05D000604 ORTHO05D004512 3.9e-32 142.1 200 40.5
CBR_g41142 Chara braunii HOM05D000604 ORTHO05D004512 1.5e-31 140.2 200 40.0
Pp3c15_25980 Physcomitrium patens HOM05D000604 ORTHO05D004512 3.3e-31 139.0 200 40.0
PGSC0003DMG400003689 Solanum tuberosum HOM05D000604 ORTHO05D004512 2.8e-30 136.0 181 44.8
Nitab4.5_0005181g0060 Nicotiana tabacum HOM05D000604 ORTHO05D004512 3.1e-29 132.5 220 38.6
Peaxi162Scf01056g00011 Petunia axillaris HOM05D000604 ORTHO05D004512 7.7e-28 127.9 110 54.5
ATR1149G096 Amborella trichopoda HOM05D000604 ORTHO05D004512 5.0e-27 125.2 140 45.0
QL11p023874 Quercus lobata HOM05D000604 ORTHO05D004512 1.5e-23 113.6 127 51.2
Oeu052139.1 Olea europaea HOM05D000604 ORTHO05D004512 2.0e-23 113.2 126 49.2
AUR62036638 Chenopodium quinoa HOM05D000604 ORTHO05D004512 4.4e-23 112.1 109 52.3
Nn8g38559 Nelumbo nucifera HOM05D000604 ORTHO05D004512 5.7e-23 111.7 126 48.4
Ah.04g159950 Amaranthus hybridus HOM05D000604 ORTHO05D004512 1.7e-22 110.2 126 47.6
Oeu025244.1 Olea europaea HOM05D000604 ORTHO05D004512 5.3e-21 105.1 126 46.0
TAR362G0854 Trochodendron aralioides HOM05D000604 ORTHO05D004512 7.7e-20 101.3 67 71.6
Actinidia19815 Actinidia chinensis HOM05D000604 ORTHO05D004512 3.8e-19 99.0 85 55.3
Migut.K01228 Erythranthe guttata HOM05D000604 ORTHO05D004512 8.5e-19 97.8 86 53.5
Oeu049932.2 Olea europaea HOM05D000604 ORTHO05D004512 1.5e-18 97.1 79 58.2
MCO04G357 Micromonas commoda HOM05D000604 ORTHO05D004512 7.2e-18 94.7 193 28.5
Thhalv10001260m.g Eutrema salsugineum HOM05D000604 ORTHO05D004512 2.7e-17 92.8 143 42.7
QL01p038682 Quercus lobata HOM05D000604 ORTHO05D004512 2.7e-17 92.8 68 63.2
SMO287G0022 Selaginella moellendorffii HOM05D000604 ORTHO05D004512 1.4e-16 90.5 135 38.5
GSVIVG01029422001 Vitis vinifera HOM05D000604 ORTHO05D004512 1.4e-16 90.5 57 73.7
Cre07.g321650 Chlamydomonas reinhardtii HOM05D000604 ORTHO05D004512 2.0e-15 86.7 196 30.1
Lj6C237T1 Lonicera japonica HOM05D000604 ORTHO05D004512 7.5e-15 84.7 88 46.6
Lj6C239T2 Lonicera japonica HOM05D000604 ORTHO05D004512 2.2e-14 83.2 127 38.6
Nitab4.5_0002186g0110 Nicotiana tabacum HOM05D000604 ORTHO05D004512 1.8e-13 80.1 89 51.7
Lj6C237G2 Lonicera japonica HOM05D000604 ORTHO05D004512 1.2e-12 77.4 118 40.7
Actinidia19814 Actinidia chinensis HOM05D000604 ORTHO05D004512 5.0e-11 72.0 46 67.4
Oeu025246.1 Olea europaea HOM05D000604 ORTHO05D004512 5.5e-10 68.6 48 64.6
Lj6C238T5 Lonicera japonica HOM05D000604 ORTHO05D004512 7.2e-10 68.2 112 37.5


User provided reference genes

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