Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 2.6e-208 728.4 356 100.0
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.0e-167 593.6 373 80.4
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 5.8e-155 551.2 373 74.5
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 1.7e-143 513.1 326 77.6
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.3e-135 486.9 373 67.8
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.3e-133 480.3 379 64.4
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 2.1e-133 479.6 369 66.4
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.2e-131 473.8 373 67.3
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 2.6e-131 472.6 373 65.7
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 1.7e-130 469.9 382 65.7
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 1.7e-130 469.9 373 66.0
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 2.5e-129 466.1 374 64.4
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 3.5e-128 462.2 369 65.0
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.8e-127 459.9 382 63.1
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 8.7e-127 457.6 370 64.1
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 1.6e-125 453.4 369 62.6
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 2.1e-125 453.0 325 69.2
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.1e-124 450.7 369 64.2
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.4e-124 450.3 398 60.1
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 2.0e-123 446.4 376 62.5
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 2.2e-122 443.0 403 60.5
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 5.0e-122 441.8 371 62.8
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 5.0e-122 441.8 371 63.1
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 8.4e-122 441.0 368 62.2
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.9e-121 439.9 371 62.8
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 1.3e-119 433.7 368 62.8
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 2.2e-117 426.4 372 59.9
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 4.8e-117 425.2 376 60.1
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.1e-116 424.1 370 60.5
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 1.1e-116 424.1 372 59.9
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 1.1e-116 424.1 372 59.7
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 1.4e-116 423.7 371 61.2
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.8e-116 423.3 370 61.6
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 2.6e-115 419.5 370 58.6
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 3.4e-115 419.1 371 58.8
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 4.5e-115 418.7 373 58.7
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 1.3e-114 417.2 373 57.9
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.3e-114 417.2 376 58.2
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 2.2e-114 416.4 373 57.4
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 3.8e-114 415.6 371 62.0
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 6.5e-114 414.8 372 58.3
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 8.5e-114 414.5 371 57.7
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.5e-114 414.5 378 59.5
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 3.2e-113 412.5 378 56.3
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 4.2e-113 412.1 369 56.9
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 5.5e-113 411.8 374 58.6
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 1.0e-111 407.5 374 59.1
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 1.0e-111 407.5 372 58.3
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 1.8e-111 406.8 369 59.6
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.0e-111 406.0 496 48.6
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.0e-111 406.0 373 57.1
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 3.0e-111 406.0 373 58.2
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 1.1e-110 404.1 371 57.7
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 1.1e-110 404.1 370 56.8
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 1.1e-110 404.1 370 56.8
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 1.5e-110 403.7 370 56.8
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 1.5e-110 403.7 370 56.2
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 2.0e-110 403.3 371 57.1
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 2.5e-110 402.9 370 57.6
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 3.3e-110 402.5 370 57.8
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 5.7e-110 401.7 370 55.4
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 7.4e-110 401.4 327 62.1
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 2.2e-109 399.8 370 56.2
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 2.2e-109 399.8 372 57.5
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 2.8e-109 399.4 373 56.8
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 3.7e-109 399.1 370 55.9
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.8e-109 398.7 373 56.8
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 4.8e-109 398.7 373 56.8
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 6.3e-109 398.3 370 57.6
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 6.3e-109 398.3 370 56.2
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 1.1e-108 397.5 368 56.2
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 1.4e-108 397.1 370 55.9
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.4e-108 397.1 368 57.1
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.8e-108 396.7 370 55.4
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.8e-108 396.7 370 55.4
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 3.1e-108 396.0 373 55.8
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 4.1e-108 395.6 368 55.7
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 4.1e-108 395.6 369 55.6
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 4.1e-108 395.6 369 56.1
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 6.9e-108 394.8 369 56.6
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 9.1e-108 394.4 370 55.1
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 9.1e-108 394.4 373 58.2
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 9.1e-108 394.4 372 56.5
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 1.2e-107 394.0 374 57.0
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 2.0e-107 393.3 370 54.9
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 2.0e-107 393.3 381 54.6
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 3.4e-107 392.5 370 55.1
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 4.5e-107 392.1 373 54.7
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 5.9e-107 391.7 373 55.8
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 7.7e-107 391.3 398 55.0
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 2.9e-106 389.4 373 55.5
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 3.8e-106 389.0 325 59.1
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 3.8e-106 389.0 372 55.6
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.8e-106 389.0 384 54.4
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 6.5e-106 388.3 391 55.2
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 6.5e-106 388.3 373 55.5
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 5.5e-105 385.2 373 53.1
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 2.1e-104 383.3 373 54.4
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.7e-104 382.9 371 56.9
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 6.1e-104 381.7 371 56.9
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 7.9e-104 381.3 569 43.1
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 1.0e-103 380.9 378 55.6
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 6.7e-103 378.3 330 60.9
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 1.1e-102 377.5 370 54.1
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 5.7e-102 375.2 286 68.2
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.7e-101 372.5 388 54.9
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 3.7e-101 372.5 432 50.9
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 4.8e-101 372.1 370 53.8
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 5.9e-99 365.2 257 70.8
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 1.0e-98 364.4 363 53.2
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 2.1e-96 356.7 257 68.1
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 4.7e-96 355.5 341 53.7
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 1.4e-95 354.0 389 51.2
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.4e-95 354.0 383 51.4
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 1.8e-95 353.6 369 51.5
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 5.2e-95 352.1 368 52.2
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.8e-93 346.3 346 55.5
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.4e-92 344.0 370 51.1
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 2.4e-92 343.2 334 53.6
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.7e-88 328.9 299 59.9
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 8.0e-88 328.2 370 51.9
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.7e-85 320.5 370 48.1
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 8.3e-85 318.2 375 48.0
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 1.8e-84 317.0 255 63.1
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 5.9e-83 312.0 256 62.1
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 6.5e-82 308.5 337 50.1
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 5.5e-81 305.4 438 42.9
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.7e-80 302.4 330 51.2
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 7.5e-78 295.0 375 48.3
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.7e-77 292.7 389 45.5
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 7.0e-76 288.5 306 55.6
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 1.0e-74 284.6 265 55.8
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 1.9e-73 280.4 375 43.2
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 2.5e-73 280.0 393 41.5
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 4.9e-69 265.8 301 47.5
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.0e-66 258.1 361 45.4
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 7.8e-59 231.9 373 39.4
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 4.7e-56 222.6 177 63.3
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 6.2e-56 222.2 375 39.2
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 6.8e-55 218.8 268 48.1
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 9.8e-54 214.9 318 39.9
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 1.5e-49 201.1 231 52.4
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 5.6e-49 199.1 231 50.6
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 1.4e-47 194.5 215 45.6
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 5.1e-42 176.0 114 74.6
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 1.6e-35 154.5 291 37.1
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 3.4e-30 136.7 349 30.4
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 2.9e-29 133.7 312 30.8
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.4e-28 129.4 151 51.7
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.3e-26 124.8 96 60.4
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 2.8e-24 117.1 305 25.9
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 6.9e-23 112.5 81 65.4
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.1e-17 95.1 63 65.1
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 4.0e-15 86.7 81 55.6
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.7e-13 81.3 75 58.7
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 4.2e-12 76.6 137 38.0
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.7e-11 73.9 118 39.8
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 3.7e-08 63.5 35 74.3
SEGI_35437 Sequoiadendron giganteum HOM05D004534 ORTHO05D005413 2.6e-06 57.4 37 70.3


User provided reference genes

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