Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 9.5e-127 456.8 228 100.0
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.2e-122 441.8 228 96.1
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.3e-119 431.8 228 93.0
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 7.1e-114 414.1 230 89.6
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 1.5e-92 343.2 231 78.8
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 5.5e-90 334.7 225 77.3
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 7.1e-90 334.3 225 76.9
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.1e-89 332.8 225 76.9
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 3.3e-87 325.5 231 73.2
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 1.8e-85 319.7 232 73.7
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 1.5e-84 316.6 230 70.9
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 2.9e-83 312.4 227 70.9
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 6.5e-83 311.2 229 70.7
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 1.1e-82 310.5 232 70.7
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 3.2e-82 308.9 228 71.5
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 4.2e-82 308.5 229 70.7
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 4.2e-82 308.5 226 72.6
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 9.3e-82 307.4 231 70.1
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 1.2e-81 307.0 234 67.9
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 3.5e-81 305.4 229 72.1
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 7.9e-81 304.3 236 66.1
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 1.3e-80 303.5 227 69.2
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 3.0e-80 302.4 238 68.1
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 3.9e-80 302.0 235 69.8
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.5e-79 300.1 238 67.6
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 7.4e-79 297.7 239 66.5
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 7.4e-79 297.7 226 68.6
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 7.4e-79 297.7 226 68.6
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 9.7e-79 297.4 226 69.0
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 1.6e-78 296.6 227 69.2
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 2.2e-78 296.2 234 66.2
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 2.8e-78 295.8 235 68.9
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.8e-78 295.8 233 67.4
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.8e-78 295.8 233 67.4
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 3.7e-78 295.4 226 68.6
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 4.8e-78 295.0 220 68.6
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 6.3e-78 294.7 223 69.1
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 1.4e-77 293.5 238 63.9
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 2.4e-77 292.7 228 67.5
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 4.1e-77 292.0 236 67.4
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 6.9e-77 291.2 221 68.3
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 2.0e-76 289.7 227 69.2
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.6e-76 289.3 227 67.0
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 2.6e-76 289.3 238 65.1
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.4e-76 288.9 227 66.1
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 3.4e-76 288.9 229 66.8
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 4.5e-76 288.5 234 65.8
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 4.5e-76 288.5 238 65.5
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 7.7e-76 287.7 220 68.6
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 7.7e-76 287.7 225 66.7
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 7.7e-76 287.7 226 66.8
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.3e-75 287.0 220 68.2
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.3e-75 287.0 220 68.2
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.3e-75 287.0 226 67.7
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 1.7e-75 286.6 239 64.0
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 2.2e-75 286.2 218 65.6
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 6.5e-75 284.6 197 72.6
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 6.5e-75 284.6 232 63.8
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 1.1e-74 283.9 218 65.1
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 2.5e-74 282.7 222 68.5
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.5e-74 282.7 233 67.0
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 4.2e-74 282.0 220 66.4
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 4.2e-74 282.0 220 66.4
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 9.4e-74 280.8 222 66.7
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.2e-73 280.4 233 65.7
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 1.2e-73 280.4 218 67.9
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 2.7e-73 279.3 232 66.4
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 4.6e-73 278.5 192 70.8
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 7.9e-73 277.7 235 61.7
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 1.4e-72 276.9 192 72.9
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 6.7e-72 274.6 220 65.5
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 6.7e-72 274.6 220 65.5
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 6.7e-72 274.6 220 65.5
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 8.8e-72 274.2 220 67.3
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.1e-71 273.9 220 66.4
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.0e-71 273.1 194 71.1
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 2.5e-71 272.7 235 61.3
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 3.3e-71 272.3 194 71.6
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 3.3e-71 272.3 204 68.6
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 5.7e-71 271.6 194 70.6
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 5.7e-71 271.6 235 62.6
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 7.4e-71 271.2 194 70.6
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 7.4e-71 271.2 231 64.1
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 4.8e-70 268.5 194 70.6
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 4.8e-70 268.5 202 66.8
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 6.3e-70 268.1 204 67.6
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 8.2e-70 267.7 197 69.0
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 8.2e-70 267.7 221 62.9
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 1.8e-69 266.5 224 62.1
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 1.0e-67 260.8 218 61.5
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 2.9e-67 259.2 232 62.9
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 6.5e-67 258.1 208 64.4
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 6.5e-67 258.1 226 59.7
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 6.5e-67 258.1 229 61.1
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.1e-66 257.3 228 59.6
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 6.1e-65 251.5 229 59.8
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 1.0e-64 250.8 180 68.9
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 8.8e-64 247.7 222 59.9
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 2.0e-63 246.5 195 64.6
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 5.7e-63 245.0 183 67.2
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 2.4e-61 239.6 216 59.7
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 5.3e-61 238.4 179 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 1.2e-60 237.3 179 64.2
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.0e-60 236.5 180 65.0
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.0e-60 236.5 176 68.2
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 2.3e-56 223.0 175 66.3
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 7.0e-53 211.5 145 71.7
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 3.5e-52 209.1 134 70.9
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 2.2e-46 189.9 230 50.0
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 7.0e-45 184.9 182 50.5
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 7.0e-45 184.9 147 61.2
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 1.6e-44 183.7 147 60.5
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.6e-44 183.7 147 60.5
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 5.9e-44 181.8 146 60.3
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.0e-43 181.0 146 60.3
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.7e-43 180.3 146 59.6
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 1.7e-43 180.3 147 59.9
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 2.2e-43 179.9 147 59.2
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 2.2e-43 179.9 147 59.2
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 2.2e-43 179.9 147 59.2
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 5.0e-43 178.7 145 59.3
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 5.0e-43 178.7 146 59.6
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 6.5e-43 178.3 147 58.5
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 6.5e-43 178.3 147 58.5
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.1e-42 177.6 146 57.5
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 2.5e-42 176.4 146 58.2
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 6.8e-40 168.3 146 54.8
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.4e-39 166.0 101 79.2
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 1.5e-34 150.6 104 71.2
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 4.2e-34 149.1 170 46.5
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.6e-31 139.8 234 43.2
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 9.2e-29 131.3 105 60.0
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 1.2e-28 131.0 132 54.5
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 1.6e-28 130.6 93 71.0
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 1.0e-27 127.9 160 43.1
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.9e-27 126.3 167 43.1
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 3.9e-27 125.9 193 39.9
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.1e-25 120.2 170 40.0
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 8.0e-25 118.2 133 57.1
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 1.4e-21 107.5 228 37.7
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.4e-21 105.5 135 45.9
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 9.2e-21 104.8 202 32.2
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 6.6e-19 98.6 58 81.0
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.9e-18 97.1 150 35.3
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 1.9e-18 97.1 70 60.0
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.5e-18 96.7 101 52.5
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 9.5e-18 94.7 155 34.2
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 5.2e-16 89.0 100 55.0
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 7.1e-13 78.6 113 40.7
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 1.6e-09 67.4 69 53.6
Hma1.2p1_1893F.1_g306730 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 8.9e-08 61.6 59 49.2


User provided reference genes

Program Settings