Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 5.2e-162 574.3 290 100.0
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.4e-127 459.9 281 86.1
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 7.1e-119 431.0 281 80.1
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.3e-117 426.0 281 80.8
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 3.0e-117 425.6 281 79.7
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 2.4e-114 416.0 284 78.5
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 6.9e-114 414.5 289 77.9
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 9.0e-114 414.1 284 78.9
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 2.0e-113 412.9 284 78.2
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 4.5e-113 411.8 282 77.7
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 1.3e-112 410.2 284 77.5
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.2e-112 409.5 284 77.1
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 2.9e-112 409.1 284 78.5
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 6.5e-112 407.9 284 76.4
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 8.4e-112 407.5 284 76.4
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.1e-111 407.1 282 76.2
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.9e-111 406.4 284 77.8
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.2e-111 405.6 284 76.1
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 5.5e-111 404.8 284 75.4
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 9.3e-111 404.1 285 76.5
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.2e-110 403.7 284 75.7
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.2e-110 403.7 284 77.8
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.2e-110 403.7 282 75.9
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 2.1e-110 402.9 282 76.6
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 2.7e-110 402.5 284 74.6
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 2.7e-110 402.5 283 75.6
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.6e-110 401.7 284 75.4
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 7.9e-110 401.0 285 76.5
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 7.9e-110 401.0 282 76.6
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.0e-109 400.6 284 75.4
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.3e-109 400.2 283 76.0
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.3e-109 400.2 283 76.0
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 1.8e-109 399.8 283 76.0
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 3.9e-109 398.7 283 75.3
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 3.9e-109 398.7 284 74.6
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 6.7e-109 397.9 284 74.6
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 6.7e-109 397.9 284 74.6
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.5e-108 396.0 284 74.3
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 3.3e-108 395.6 284 74.3
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 4.3e-108 395.2 282 75.9
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 7.4e-108 394.4 284 75.7
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.3e-107 393.7 284 73.6
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 1.3e-107 393.7 284 73.9
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.7e-107 392.1 284 74.6
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 4.8e-107 391.7 289 73.4
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 4.8e-107 391.7 285 74.0
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 4.8e-107 391.7 282 74.8
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 4.8e-107 391.7 284 75.0
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 8.2e-107 391.0 284 74.6
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.2e-107 391.0 284 74.3
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 8.2e-107 391.0 287 74.9
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.1e-106 390.6 284 74.3
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.4e-106 390.2 286 72.4
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.8e-106 389.8 293 71.7
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.4e-106 389.4 283 74.9
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.4e-106 389.4 284 73.9
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 5.3e-106 388.3 284 73.2
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 6.9e-106 387.9 287 72.5
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 9.0e-106 387.5 284 75.0
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.5e-105 386.7 284 73.6
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.6e-105 386.0 284 72.9
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.0e-104 384.0 296 69.9
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 1.0e-104 384.0 284 74.6
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 1.0e-104 384.0 284 75.0
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.3e-104 383.6 284 74.3
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.7e-104 383.3 282 74.1
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.9e-104 382.5 282 74.1
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 5.0e-104 381.7 283 73.1
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.0e-104 381.7 284 70.8
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 5.0e-104 381.7 284 73.9
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 6.5e-104 381.3 282 72.3
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 6.5e-104 381.3 284 74.6
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 1.1e-103 380.6 284 74.6
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.9e-103 379.8 285 71.9
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 1.9e-103 379.8 287 70.7
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.9e-103 379.8 282 72.0
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.5e-103 379.4 282 72.0
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.2e-103 379.0 285 71.2
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.2e-102 377.1 284 71.1
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.6e-102 376.7 284 74.3
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.6e-102 376.7 286 70.6
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 1.6e-102 376.7 285 73.0
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.7e-102 375.9 282 71.3
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.6e-102 375.6 282 72.0
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 4.6e-102 375.2 284 72.9
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.6e-102 375.2 282 73.4
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 6.1e-102 374.8 307 69.1
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.8e-101 373.2 282 70.2
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 2.3e-101 372.9 284 72.5
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 5.1e-101 371.7 282 73.4
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.9e-100 369.8 285 70.2
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.9e-100 369.8 285 71.9
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 7.4e-100 367.9 283 71.4
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 7.4e-100 367.9 284 69.7
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 9.7e-100 367.5 223 86.1
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.3e-99 367.1 284 71.1
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 2.2e-99 366.3 283 71.4
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 3.1e-98 362.5 284 69.0
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 9.0e-98 360.9 282 69.5
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 2.2e-96 356.3 282 70.2
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 6.5e-96 354.8 296 67.2
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 1.1e-95 354.0 282 69.5
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 1.0e-93 347.4 277 69.0
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.0e-93 347.4 284 66.9
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 5.1e-93 345.1 335 61.5
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.5e-92 343.6 288 66.3
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 9.7e-92 340.9 259 71.0
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.3e-91 340.5 284 66.2
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 2.8e-91 339.3 285 66.0
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 3.7e-91 339.0 284 64.4
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 4.8e-91 338.6 285 65.3
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 3.1e-90 335.9 282 66.3
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 4.1e-90 335.5 285 65.3
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 6.9e-90 334.7 292 63.7
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 3.8e-88 328.9 283 64.0
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 5.0e-88 328.6 289 64.0
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 6.5e-88 328.2 284 62.7
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 6.5e-88 328.2 269 66.9
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 8.5e-88 327.8 282 63.5
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.4e-87 327.0 284 62.3
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.4e-87 327.0 284 62.3
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.9e-87 326.6 284 64.1
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 2.5e-87 326.2 243 72.8
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 5.5e-87 325.1 286 63.3
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 5.5e-87 325.1 286 63.3
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 5.5e-87 325.1 284 64.4
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 7.2e-87 324.7 284 62.7
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 9.4e-87 324.3 285 63.5
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 9.4e-87 324.3 285 63.5
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 9.4e-87 324.3 284 62.0
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 6.1e-86 321.6 285 62.8
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 7.9e-86 321.2 244 73.4
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.4e-85 320.5 284 63.7
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 8.8e-85 317.8 283 62.2
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 3.3e-84 315.8 284 62.0
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 4.4e-84 315.5 304 59.2
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 4.4e-84 315.5 282 62.1
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 4.4e-84 315.5 292 64.7
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.2e-83 313.2 274 63.9
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 8.2e-83 311.2 224 75.0
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 7.0e-82 308.1 284 60.9
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.5e-79 300.4 222 72.5
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 4.7e-78 295.4 283 58.7
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 1.4e-77 293.9 283 59.4
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 5.2e-77 292.0 280 59.3
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 8.8e-77 291.2 273 61.2
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 7.5e-76 288.1 280 58.9
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 1.7e-75 287.0 281 58.4
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 2.0e-73 280.0 283 57.2
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.7e-72 276.9 221 67.4
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.4e-68 262.7 176 77.3
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.8e-58 230.3 159 76.7
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 6.8e-37 158.7 245 42.4
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 8.3e-35 151.8 118 69.5
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 1.9e-34 150.6 180 47.8
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 1.6e-33 147.5 237 39.2
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.7e-33 146.7 232 42.7
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.2e-26 123.2 108 68.5
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.2e-26 123.2 106 66.0
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.7e-25 120.2 124 54.0
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-22 110.9 262 34.7
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.8e-21 107.5 108 55.6
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 2.7e-17 93.6 123 42.3
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 5.1e-16 89.4 57 75.4
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 5.6e-15 85.9 211 32.7
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 1.3e-14 84.7 111 47.7
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 1.4e-13 81.3 43 81.4
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.6e-12 77.0 59 67.8
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.7e-11 74.3 41 80.5
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 8.4e-11 72.0 43 72.1
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 4.6e-09 66.2 34 97.1


User provided reference genes

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