Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 2282.7 1195 100.0
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 2044.2 1245 87.8
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1853.6 1244 80.3
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1630.9 1251 71.1
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1598.9 1257 69.7
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1597.0 1282 68.3
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1563.1 1243 69.0
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1558.1 1241 69.1
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1554.7 1283 67.7
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1553.9 1218 69.9
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1552.0 1249 68.4
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1541.6 1249 68.1
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1538.5 1241 68.7
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1532.3 1246 68.4
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1527.3 1254 67.0
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1526.1 1248 67.8
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1518.8 1254 66.7
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1512.7 1254 66.5
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1508.0 1251 66.4
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1508.0 1258 66.5
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1506.5 1225 68.1
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1505.3 1239 67.2
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1486.5 1245 65.9
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1483.8 1216 67.5
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1479.2 1216 67.6
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1474.9 1227 65.2
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1468.4 1235 65.1
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1467.6 1239 64.4
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1462.6 1238 66.5
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1461.4 1230 65.9
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1459.5 1181 66.7
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1458.7 1245 64.5
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1456.0 1215 66.8
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1453.0 1246 64.4
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1450.3 1244 64.2
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1448.3 1233 65.4
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1448.3 1176 66.2
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1447.2 1193 66.4
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1446.0 1239 64.2
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1444.9 1261 63.0
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1439.5 1230 64.5
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1436.8 1179 66.5
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1436.4 1233 64.2
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1434.5 1234 64.6
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1432.5 1257 64.4
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1428.3 1256 62.8
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1427.9 1240 63.3
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1426.4 1233 63.8
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1426.0 1233 64.2
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1425.6 1256 62.7
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1421.4 1276 62.5
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1421.4 1276 62.5
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1421.4 1249 63.5
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1421.0 1262 63.1
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1420.2 1276 62.5
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1419.4 1256 62.5
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1419.1 1244 63.4
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1419.1 1244 63.4
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1412.1 1244 63.1
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1411.7 1221 64.5
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1411.0 1221 62.7
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1407.5 1211 64.1
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1407.5 1242 63.5
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1405.2 1436 57.3
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1404.4 1229 63.6
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1404.0 1244 63.0
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1404.0 1249 63.7
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1403.3 1233 63.4
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1403.3 1201 64.1
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1401.7 1245 63.1
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1397.1 1249 62.8
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1395.2 1247 63.4
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1390.6 1253 61.9
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1385.5 1181 63.8
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1383.2 1249 62.1
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1383.2 1373 58.3
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1380.2 1250 62.6
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1376.3 1222 62.6
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1374.8 1235 61.9
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1374.4 1209 64.1
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1374.0 1250 61.8
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1364.0 1230 61.5
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1346.3 1242 61.3
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1343.9 1168 62.8
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1337.4 1215 61.3
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1318.9 1181 63.1
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1311.2 1266 58.9
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1301.2 1183 62.1
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1297.0 1263 58.0
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1289.6 1187 60.8
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1285.4 1244 58.8
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1223.0 1204 57.6
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1214.5 1056 63.4
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1157.5 1213 56.3
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1155.2 1096 58.4
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1137.9 1210 55.3
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1135.9 1103 58.2
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1112.8 1012 62.4
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1108.6 1149 55.0
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1096.6 827 71.6
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1076.2 1215 54.2
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 3.8e-307 1058.5 1221 51.7
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 1.3e-288 996.9 1198 49.7
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.2e-276 957.2 801 66.3
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 5.8e-276 954.9 1147 48.4
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 1.8e-269 933.3 1265 47.4
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 4.6e-257 892.1 706 66.7
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 4.6e-257 892.1 739 64.8
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 8.8e-240 834.7 978 49.9
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.2e-234 815.8 667 65.4
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 2.9e-227 793.1 1287 40.8
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 5.4e-221 772.3 740 60.3
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 2.9e-219 766.5 661 62.3
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.1e-218 764.6 634 64.7
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 1.8e-208 730.7 1273 38.7
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 2.3e-203 713.8 673 59.4
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 2.3e-203 713.8 607 62.8
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 5.8e-199 699.1 583 66.4
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.1e-193 680.6 1198 38.8
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.6e-191 673.7 565 64.6
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 9.6e-178 628.6 1139 38.4
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 4.3e-170 603.2 511 63.2
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 6.5e-150 536.2 490 61.4
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.1e-148 529.6 490 61.6
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 9.7e-138 495.7 466 60.7
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.9e-133 481.5 1549 28.7
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 1.9e-125 454.9 387 66.7
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 3.5e-119 434.1 405 63.0
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 2.2e-97 361.7 421 50.4
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 6.4e-97 360.1 477 48.2
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 1.1e-96 359.4 370 56.8
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.2e-89 335.1 309 57.9
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 4.0e-83 314.3 225 74.2
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 6.8e-83 313.5 276 60.9
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.9e-81 308.1 278 58.6
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.6e-78 297.0 384 48.4
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 2.1e-71 275.4 224 62.1
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 5.1e-62 244.2 204 63.2
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 6.6e-62 243.8 237 57.4
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-53 215.7 210 55.7
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-52 213.0 208 55.8
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 2.8e-52 211.8 180 59.4
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-51 209.9 224 52.2
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.1e-51 208.4 204 55.9
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 2.1e-44 185.7 124 76.6
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.1e-43 183.3 183 54.1
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.3e-43 181.0 134 64.2
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.6e-42 177.2 130 64.6
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 1.0e-41 176.8 165 61.2
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 1.1e-40 173.3 130 63.8
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 2.5e-40 172.2 127 63.8
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.6e-39 167.9 287 39.7
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-35 156.8 165 58.8
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 4.6e-31 141.4 106 62.3
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.9e-30 138.3 111 59.5
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-24 120.2 121 52.9
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.0e-22 113.6 99 70.7
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.8e-22 112.8 99 70.7
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 6.5e-17 94.4 93 52.7
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 8.5e-17 94.0 161 40.4
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 2.5e-16 92.4 57 82.5
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 4.2e-16 91.7 259 31.3
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 1.8e-14 86.3 75 69.3
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.3e-14 85.9 195 30.8
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.7e-12 79.7 110 51.8
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 8.2e-12 77.4 84 48.8
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 1.8e-11 76.3 132 46.2
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.8e-09 68.6 64 53.1
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 3.8e-09 68.6 63 58.7
SHI22584 Sapria himalayana HOM05D004065 ORTHO05D004806 1.0e-06 60.5 103 46.6
Gohir.D13G142400 Gossypium hirsutum HOM05D000260 ORTHO05D020362 1.8e-06 59.7 63 63.5
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 2.3e-06 59.3 96 53.1
Gorai.002G055300 Gossypium raimondii HOM05D000671 ORTHO05D000797 6.8e-06 57.8 67 59.7
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 8.8e-06 57.4 123 32.5


User provided reference genes

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