Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 5.5e-198 694.1 355 100.0
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 3.5e-152 542.0 355 81.7
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 1.4e-116 423.7 355 62.3
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 9.0e-116 421.0 354 62.7
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 2.6e-115 419.5 353 62.6
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 1.8e-111 406.8 364 60.7
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 5.7e-110 401.7 353 60.6
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 9.7e-110 401.0 355 59.7
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 2.8e-109 399.4 353 60.3
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 2.4e-108 396.4 353 58.1
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 3.1e-108 396.0 355 59.2
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 3.1e-108 396.0 355 58.6
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 1.5e-107 393.7 353 60.3
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 2.0e-107 393.3 353 58.1
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 3.4e-107 392.5 353 58.6
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 7.7e-107 391.3 355 58.0
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 1.0e-106 391.0 353 59.5
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 2.9e-106 389.4 353 58.1
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 5.0e-106 388.7 354 57.9
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 4.2e-105 385.6 354 57.3
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 5.5e-105 385.2 354 57.6
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 9.4e-105 384.4 355 56.9
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 2.1e-104 383.3 353 57.2
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 2.3e-103 379.8 353 57.2
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 5.1e-103 378.6 355 56.6
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 8.8e-103 377.9 355 56.6
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 3.3e-102 375.9 355 56.3
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.2e-101 373.2 355 56.1
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 6.3e-101 371.7 353 55.8
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 1.8e-100 370.2 353 55.0
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.4e-100 369.8 355 55.8
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 2.4e-100 369.8 353 56.7
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 5.3e-100 368.6 355 56.3
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 1.5e-99 367.1 355 55.8
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 1.5e-99 367.1 475 46.5
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 2.2e-98 363.2 353 55.0
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 2.9e-98 362.8 353 52.7
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 8.5e-98 361.3 355 56.1
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 1.4e-97 360.5 353 55.8
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 1.9e-97 360.1 356 55.6
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 1.9e-97 360.1 356 55.6
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 2.5e-97 359.8 355 54.9
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 5.5e-97 358.6 398 52.8
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 5.5e-97 358.6 355 54.6
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 7.2e-97 358.2 353 54.1
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 1.6e-96 357.1 317 59.6
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 1.6e-96 357.1 355 53.8
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 5.1e-95 352.1 353 53.8
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 1.1e-94 350.9 355 53.2
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 4.8e-93 345.5 353 51.6
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 6.3e-93 345.1 353 49.3
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 8.2e-93 344.7 353 51.0
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 1.4e-92 344.0 353 52.4
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 9.1e-92 341.3 351 52.4
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 1.2e-91 340.9 353 50.7
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 5.9e-91 338.6 353 50.1
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 1.7e-90 337.0 351 49.6
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 2.2e-90 336.7 388 48.5
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 2.2e-90 336.7 353 49.9
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 1.9e-89 333.6 353 50.1
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 9.4e-89 331.3 354 50.3
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 1.6e-88 330.5 404 48.5
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 1.6e-88 330.5 353 49.6
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 8.0e-88 328.2 353 51.6
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 8.0e-88 328.2 357 49.6
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 1.8e-87 327.0 354 50.0
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 3.9e-87 325.9 283 61.8
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 3.9e-87 325.9 352 50.3
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 1.3e-85 320.9 360 48.6
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 2.4e-84 316.6 354 47.2
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 4.1e-84 315.8 354 49.2
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 4.5e-83 312.4 354 45.5
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 7.7e-83 311.6 354 46.3
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 7.7e-83 311.6 354 46.3
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 3.8e-82 309.3 354 46.9
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 5.0e-82 308.9 354 46.3
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 6.5e-82 308.5 338 47.9
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 6.5e-82 308.5 354 45.8
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 1.1e-81 307.8 347 47.3
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 4.2e-81 305.8 354 45.8
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 1.6e-80 303.9 354 46.6
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 9.7e-78 294.7 356 46.6
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 1.7e-77 293.9 339 45.7
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 3.7e-77 292.7 286 56.6
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.4e-76 290.8 286 56.3
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 7.0e-76 288.5 343 48.4
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 1.6e-75 287.3 283 53.7
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 1.3e-74 284.3 339 45.7
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 2.2e-74 283.5 354 43.8
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 3.2e-73 279.6 296 52.7
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 2.7e-72 276.6 287 55.1
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 4.4e-70 269.2 346 44.5
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 4.5e-67 259.2 370 41.9
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 4.0e-63 246.1 268 50.4
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 2.4e-60 236.9 340 38.8
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 1.2e-59 234.6 348 39.9
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 3.5e-59 233.0 265 49.8
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 1.0e-58 231.5 284 44.7
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 5.0e-58 229.2 280 47.9
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 3.3e-57 226.5 217 55.8
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 7.3e-57 225.3 288 42.7
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 7.1e-44 182.2 339 32.2
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 9.2e-44 181.8 286 40.9
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 7.3e-41 172.2 114 70.2
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 7.1e-28 129.0 118 59.3
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 2.3e-26 124.0 321 24.6
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 2.4e-23 114.0 67 79.1
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 9.0e-23 112.1 67 77.6
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 3.8e-21 106.7 65 72.3
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 3.8e-21 106.7 67 71.6
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 7.1e-20 102.4 64 70.3
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 8.4e-13 79.0 63 58.7


User provided reference genes

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