Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 6.1e-118 427.6 226 100.0
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 7.5e-108 394.0 226 89.8
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.2e-107 392.5 226 90.3
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 3.7e-107 391.7 226 86.7
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 2.7e-97 359.0 226 85.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 3.6e-94 348.6 228 78.9
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 5.2e-93 344.7 227 78.4
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 6.8e-93 344.4 225 83.1
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 8.9e-93 344.0 237 78.9
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.5e-92 343.2 212 81.6
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 3.4e-92 342.0 229 82.1
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 4.4e-92 341.7 230 76.1
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 5.8e-92 341.3 228 82.0
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 9.9e-92 340.5 209 80.4
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.3e-91 340.1 203 83.7
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 2.9e-91 339.0 226 81.0
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.9e-91 339.0 209 79.9
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.9e-91 339.0 209 79.9
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.7e-91 338.6 233 74.2
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 3.7e-91 338.6 234 76.1
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 3.7e-91 338.6 211 79.6
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 8.3e-91 337.4 227 76.2
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.1e-90 337.0 233 73.8
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.1e-90 337.0 233 73.8
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.4e-90 336.7 233 73.8
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.4e-90 336.7 233 73.8
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.9e-90 336.3 229 74.7
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.9e-90 336.3 227 78.9
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 2.4e-90 335.9 233 73.8
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.2e-90 335.5 208 78.8
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 3.2e-90 335.5 236 79.7
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.1e-90 334.3 209 78.0
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 7.1e-90 334.3 213 77.9
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 7.1e-90 334.3 200 81.5
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 9.2e-90 334.0 233 75.5
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 9.2e-90 334.0 233 75.5
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.2e-89 333.6 211 78.2
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.2e-89 333.6 229 75.1
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.6e-89 333.2 228 75.0
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 1.6e-89 333.2 209 76.6
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 2.1e-89 332.8 234 73.5
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 7.8e-89 330.9 226 79.2
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.3e-88 330.1 209 78.0
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.3e-88 330.1 227 74.9
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.7e-88 329.7 214 78.5
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 3.0e-88 328.9 231 73.6
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 3.0e-88 328.9 209 76.6
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 8.6e-88 327.4 211 80.1
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 8.6e-88 327.4 211 80.1
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.5e-87 326.6 211 80.1
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.5e-87 326.6 226 78.3
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.5e-87 326.6 227 77.1
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 1.5e-87 326.6 224 75.9
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.9e-87 326.2 211 77.7
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.9e-87 326.2 226 78.8
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.1e-86 322.8 210 77.1
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 6.2e-86 321.2 218 76.1
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 1.8e-85 319.7 214 74.8
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 2.4e-85 319.3 229 77.3
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 8.9e-85 317.4 213 74.2
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 2.6e-84 315.8 233 74.2
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.4e-84 315.1 210 74.8
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 7.6e-84 314.3 211 75.8
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 7.6e-84 314.3 204 77.0
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 7.6e-84 314.3 228 75.4
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 9.9e-84 313.9 228 71.5
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 2.9e-83 312.4 212 74.5
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 1.4e-82 310.1 223 74.4
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.9e-82 309.7 231 71.0
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 1.9e-82 309.7 210 75.2
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 4.2e-82 308.5 210 75.2
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.2e-81 307.0 199 79.4
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.6e-81 306.6 238 68.9
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.6e-81 306.6 208 76.4
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 2.7e-81 305.8 209 73.7
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 6.0e-81 304.7 206 74.3
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.0e-80 303.9 226 73.5
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.3e-80 303.5 229 73.4
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 2.3e-80 302.8 232 72.8
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 6.6e-80 301.2 226 71.2
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.1e-79 300.4 208 73.6
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.6e-79 298.1 227 68.7
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 9.6e-79 297.4 226 73.9
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 2.1e-78 296.2 202 71.3
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.8e-77 293.1 231 67.1
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 1.3e-75 287.0 229 64.2
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 2.2e-75 286.2 231 68.0
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.9e-75 285.8 193 71.5
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.8e-75 285.4 228 64.9
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 6.4e-75 284.6 205 71.2
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 8.4e-75 284.3 247 65.2
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 8.4e-75 284.3 239 66.9
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.4e-74 283.5 216 74.1
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 1.9e-74 283.1 205 70.7
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 1.9e-74 283.1 202 67.8
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.9e-74 283.1 231 67.1
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 4.2e-74 282.0 202 67.3
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 5.4e-74 281.6 216 73.1
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 9.3e-74 280.8 231 66.2
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 9.3e-74 280.8 231 66.2
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 9.3e-74 280.8 231 66.2
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 2.1e-73 279.6 226 65.9
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 2.7e-73 279.3 220 70.0
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 3.5e-73 278.9 231 64.9
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 4.6e-73 278.5 231 65.8
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 4.6e-73 278.5 231 66.2
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 4.6e-73 278.5 231 65.8
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 4.6e-73 278.5 205 70.2
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 2.3e-72 276.2 218 65.6
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 3.0e-72 275.8 231 64.9
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 3.9e-72 275.4 231 64.9
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 5.1e-72 275.0 212 66.5
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 6.6e-72 274.6 231 64.1
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 6.6e-72 274.6 231 64.9
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 8.7e-72 274.2 194 72.7
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 8.7e-72 274.2 226 68.6
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.3e-70 270.4 232 63.8
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.3e-70 270.4 207 66.2
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 4.5e-68 261.9 202 64.4
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.9e-66 256.5 213 59.6
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 9.3e-66 254.2 204 63.7
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 2.7e-65 252.7 207 60.9
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.0e-64 250.8 221 62.0
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 3.1e-61 239.2 216 62.0
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 3.1e-61 239.2 230 62.6
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 5.8e-60 235.0 165 72.1
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 3.2e-58 229.2 143 79.0
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.2e-57 227.3 191 66.0
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.1e-55 220.7 202 55.9
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.2e-52 210.7 206 58.3
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 7.6e-52 208.0 120 85.0
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 5.0e-51 205.3 166 62.7
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 7.4e-47 191.4 127 76.4
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.1e-45 185.7 204 53.9
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 2.5e-42 176.4 121 68.6
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 5.7e-39 165.2 105 73.3
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 8.2e-38 161.4 104 76.0
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 4.1e-37 159.1 102 75.5
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 8.5e-19 98.2 62 72.6
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 2.0e-12 77.0 94 48.9
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 9.8e-07 58.2 148 25.7
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 9.8e-07 58.2 148 25.7
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.7e-06 57.4 171 25.7


User provided reference genes

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