Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0148300 Salix brachista HOM05D003476 ORTHO05D004057 4.8e-85 317.8 159 100.0
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 2.0e-67 259.2 194 72.7
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 4.9e-61 238.0 187 67.9
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 3.1e-60 235.3 181 72.4
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 1.3e-58 229.9 193 65.3
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 1.7e-58 229.6 194 64.4
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 3.8e-58 228.4 187 65.8
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 6.6e-58 227.6 194 62.9
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 8.6e-58 227.3 192 64.6
BolC4t22371H Brassica oleracea HOM05D003476 ORTHO05D004057 1.1e-57 226.9 175 70.3
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 1.5e-57 226.5 182 68.7
C04p07540 Brassica napus HOM05D003476 ORTHO05D004057 2.5e-57 225.7 175 69.7
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 2.5e-57 225.7 198 62.6
Duzib114G0190 Durio zibethinus HOM05D003476 ORTHO05D004057 6.1e-56 221.1 157 72.6
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 8.0e-56 220.7 194 62.9
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 1.4e-55 219.9 204 58.8
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 1.4e-55 219.9 193 60.6
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 1.8e-55 219.5 189 61.4
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 2.3e-55 219.2 188 62.2
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.3e-55 219.2 182 64.8
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.3e-55 219.2 182 64.8
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 3.0e-55 218.8 193 63.2
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 4.0e-55 218.4 190 63.7
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 5.2e-55 218.0 195 63.1
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 5.2e-55 218.0 182 64.3
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 5.2e-55 218.0 204 59.3
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 8.9e-55 217.2 190 63.7
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 8.9e-55 217.2 203 60.1
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 8.9e-55 217.2 198 60.6
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 1.5e-54 216.5 183 63.4
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 2.0e-54 216.1 190 63.7
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 2.6e-54 215.7 187 61.0
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 3.4e-54 215.3 205 59.5
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 3.4e-54 215.3 193 61.1
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 3.4e-54 215.3 182 62.6
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 4.4e-54 214.9 183 63.9
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 7.5e-54 214.2 190 62.6
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 9.8e-54 213.8 197 60.4
C04p67700 Brassica napus HOM05D003476 ORTHO05D004057 1.3e-53 213.4 175 66.3
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 1.3e-53 213.4 202 59.4
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 1.3e-53 213.4 183 63.9
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.7e-53 213.0 193 61.1
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 2.9e-53 212.2 195 60.0
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 3.7e-53 211.8 207 58.9
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 4.9e-53 211.5 194 60.8
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 4.9e-53 211.5 183 61.7
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 6.3e-53 211.1 182 62.1
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 8.3e-53 210.7 197 59.9
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 8.3e-53 210.7 180 61.1
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 8.3e-53 210.7 180 61.1
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 1.1e-52 210.3 162 70.4
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.4e-52 209.9 193 60.1
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 1.8e-52 209.5 190 60.5
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 2.4e-52 209.1 180 65.6
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 2.4e-52 209.1 187 61.5
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 2.4e-52 209.1 190 60.0
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 3.2e-52 208.8 176 65.9
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 3.2e-52 208.8 154 70.8
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 3.2e-52 208.8 183 62.3
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 7.0e-52 207.6 194 60.8
CDE04G3620 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 7.0e-52 207.6 163 63.8
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 9.2e-52 207.2 198 57.1
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 1.2e-51 206.8 183 62.3
Dinv20956 Davidia involucrata HOM05D003476 ORTHO05D004057 1.2e-51 206.8 150 70.7
Dinv20987 Davidia involucrata HOM05D003476 ORTHO05D004057 1.2e-51 206.8 150 70.7
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 1.6e-51 206.5 178 63.5
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 3.5e-51 205.3 195 57.9
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 3.5e-51 205.3 187 59.9
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 5.9e-51 204.5 179 62.6
Dinv34422 Davidia involucrata HOM05D002885 ORTHO05D003350 5.9e-51 204.5 161 68.3
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 1.3e-50 203.4 184 60.3
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 1.7e-50 203.0 196 59.2
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 2.3e-50 202.6 193 60.1
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 2.9e-50 202.2 196 58.7
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 2.9e-50 202.2 196 58.7
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 3.9e-50 201.8 188 59.6
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 5.0e-50 201.4 184 59.8
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 6.6e-50 201.1 195 59.0
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 1.1e-49 200.3 194 56.2
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 1.5e-49 199.9 191 58.6
Psat2g035640 Pisum sativum HOM05D003476 ORTHO05D004057 1.5e-49 199.9 151 70.2
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 1.9e-49 199.5 194 58.2
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 2.5e-49 199.1 159 62.3
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 2.5e-49 199.1 189 61.4
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 3.3e-49 198.7 184 60.3
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 5.6e-49 198.0 194 56.2
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 7.3e-49 197.6 180 61.7
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 7.3e-49 197.6 175 62.3
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 9.5e-49 197.2 178 61.8
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 9.5e-49 197.2 169 63.3
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 1.2e-48 196.8 198 55.1
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 1.6e-48 196.4 188 56.9
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 1.6e-48 196.4 188 56.4
Ah.10g035550 Amaranthus hybridus HOM05D003476 ORTHO05D004057 2.8e-48 195.7 159 64.2
Aqoxy2G00973 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 3.6e-48 195.3 177 61.6
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 3.6e-48 195.3 190 58.4
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 8.0e-48 194.1 199 53.8
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 8.0e-48 194.1 199 55.8
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 1.0e-47 193.7 183 59.6
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 1.0e-47 193.7 221 50.2
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 1.8e-47 193.0 205 53.7
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 2.3e-47 192.6 187 54.5
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 3.1e-47 192.2 191 57.6
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 2.6e-46 189.1 188 57.4
RcHm_v2.0_Chr1g0369411 Rosa chinensis HOM05D003476 ORTHO05D004057 2.6e-46 189.1 113 80.5
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 2.6e-46 189.1 180 57.8
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 2.2e-45 186.0 234 50.4
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 2.9e-45 185.7 182 54.9
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 8.3e-45 184.1 187 54.0
BraA04t18491Z Brassica rapa HOM05D003476 ORTHO05D004057 1.1e-44 183.7 215 52.1
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 1.4e-44 183.3 225 48.9
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 2.4e-44 182.6 180 54.4
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 7.0e-44 181.0 182 51.6
SalBow6G0374 Salvia bowleyana HOM05D003476 ORTHO05D004057 2.7e-43 179.1 114 74.6
ECA233G2895 Erigeron canadensis HOM05D003476 ORTHO05D004057 6.0e-43 177.9 158 63.3
CARHR134880 Cardamine hirsuta HOM05D003476 ORTHO05D004057 3.0e-42 175.6 112 77.7
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 3.0e-42 175.6 204 51.5
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 3.0e-42 175.6 105 81.0
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 3.9e-42 175.3 115 75.7
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 1.5e-41 173.3 179 56.4
FvH4_2g40940 Fragaria vesca HOM05D003476 ORTHO05D004057 3.3e-41 172.2 176 55.7
Ah.16g104950 Amaranthus hybridus HOM05D003476 ORTHO05D004057 4.3e-41 171.8 152 62.5
FAN27G3190 Fragaria x ananassa HOM05D003476 ORTHO05D004057 4.3e-41 171.8 114 71.9
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 4.3e-41 171.8 178 52.2
HanXRQChr08g0222271 Helianthus annuus HOM05D003476 ORTHO05D004057 5.6e-41 171.4 113 74.3
MD08G1058200 Malus domestica HOM05D003476 ORTHO05D004057 5.6e-41 171.4 113 75.2
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 1.2e-40 170.2 174 56.9
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 2.1e-40 169.5 189 54.0
Cc02_g06910 Coffea canephora HOM05D003476 ORTHO05D004057 6.2e-40 167.9 105 78.1
Aa31LG9G9900 Aethionema arabicum HOM05D002056 ORTHO05D002289 1.1e-39 167.2 134 67.9
CARHR253310 Cardamine hirsuta HOM05D003476 ORTHO05D004057 1.1e-39 167.2 115 68.7
TAR633G1753 Trochodendron aralioides HOM05D003476 ORTHO05D004057 1.1e-39 167.2 104 78.8
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 1.4e-39 166.8 159 56.0
MELO3C025156.2 Cucumis melo HOM05D003476 ORTHO05D004057 3.4e-38 162.2 166 53.6
Cfa001366 Carpinus fangiana HOM05D003476 ORTHO05D004057 1.3e-37 160.2 168 57.1
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 2.4e-36 156.0 115 71.3
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 5.4e-36 154.8 192 45.3
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 7.1e-36 154.5 188 49.5
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 2.1e-35 152.9 201 47.8
MBI14_g36886_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 2.3e-31 139.4 159 48.4
Lj1A950T60 Lonicera japonica HOM05D003476 ORTHO05D004057 6.4e-29 131.3 78 80.8
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 3.2e-28 129.0 91 68.1
vmacro06994 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 4.1e-28 128.6 212 40.1
SalBow6G0036 Salvia bowleyana HOM05D003476 ORTHO05D004057 4.6e-27 125.2 77 76.6
AagrBONN_evm.TU.Sc2ySwM_228.5499 Anthoceros agrestis HOM05D003476 ORTHO05D004057 1.7e-26 123.2 92 64.1
MBI14_g13584_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.0e-26 122.5 78 70.5
TAR636G3666 Trochodendron aralioides HOM05D003476 ORTHO05D004057 9.6e-25 117.5 131 52.7
MBI16_g37731_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 6.2e-24 114.8 75 72.0
CBR_g48322 Chara braunii HOM05D003476 ORTHO05D004057 2.4e-23 112.8 151 40.4
CDE03G0334 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 9.9e-22 107.5 149 44.3
ATR0618G195 Amborella trichopoda HOM05D003476 ORTHO05D004057 1.3e-21 107.1 68 70.6
MD01G1147400 Malus domestica HOM05D003476 ORTHO05D004057 2.9e-21 105.9 136 47.1
Prupe.2G246200 Prunus persica HOM05D003476 ORTHO05D004057 7.1e-20 101.3 58 77.6
Oeu036632.1 Olea europaea HOM05D003476 ORTHO05D004057 3.9e-18 95.5 58 77.6
Atru.chr12.241 Acer truncatum HOM05D003476 ORTHO05D004057 6.6e-18 94.7 158 43.7
Solyc04g072110.4 Solanum lycopersicum HOM05D003476 ORTHO05D004057 8.7e-18 94.4 58 75.9
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 9.6e-17 90.9 119 51.3
Aqoxy214s003 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 2.1e-16 89.7 166 39.2
MBI08_g04934_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.4e-15 87.0 68 64.7
Sc06g0000400 Simmondsia chinensis HOM05D003476 ORTHO05D004057 1.3e-13 80.5 109 45.9
Lsat_1_v5_gn_5_2880 Lactuca sativa HOM05D003476 ORTHO05D004057 4.2e-12 75.5 117 41.0
Hund03462 Selenicereus undatus HOM05D003476 ORTHO05D004057 1.2e-11 73.9 79 50.6
Zm00001eb420270 Zea mays HOM05D000224 ORTHO05D002390 3.5e-11 72.4 46 73.9
CARHR134890 Cardamine hirsuta HOM05D003476 ORTHO05D004057 6.6e-10 68.2 64 59.4
Prupe.2G246300 Prunus persica HOM05D003476 ORTHO05D004057 6.6e-10 68.2 45 71.1
Lj1A950T61 Lonicera japonica HOM05D003476 ORTHO05D004057 8.7e-10 67.8 48 72.9
RcHm_v2.0_Chr1g0369421 Rosa chinensis HOM05D003476 ORTHO05D004057 2.5e-09 66.2 45 66.7
Oeu039001.1 Olea europaea HOM05D003476 ORTHO05D004057 4.3e-09 65.5 48 70.8
Oeu039509.1 Olea europaea HOM05D003476 ORTHO05D004057 4.3e-09 65.5 48 68.8
SalBow6G1938 Salvia bowleyana HOM05D003476 ORTHO05D004057 1.3e-08 63.9 46 71.7
BcaB02g09065 Brassica carinata HOM05D003476 ORTHO05D004057 2.1e-08 63.2 47 63.8
Cpa.g.c40050 Carica papaya HOM05D003476 ORTHO05D004057 2.1e-08 63.2 38 78.9
ClCG07G004010 Citrullus lanatus HOM05D003476 ORTHO05D004057 2.4e-07 59.7 40 72.5
MD08G1058400 Malus domestica HOM05D003476 ORTHO05D004057 3.1e-07 59.3 44 68.2
TAR633G0614 Trochodendron aralioides HOM05D003476 ORTHO05D004057 3.1e-07 59.3 86 46.5
CARHR253320 Cardamine hirsuta HOM05D003476 ORTHO05D004057 4.0e-07 58.9 47 63.8
MBI14_g33799_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 4.0e-07 58.9 67 46.3
FAN15G1698 Fragaria x ananassa HOM05D003476 ORTHO05D004057 6.9e-07 58.2 44 70.5
Actinidia13919 Actinidia chinensis HOM05D003476 ORTHO05D004057 1.2e-06 57.4 36 72.2
FAN06G4561 Fragaria x ananassa HOM05D003476 ORTHO05D004057 1.2e-06 57.4 35 74.3
Lalb_Chr20g0116611 Lupinus albus HOM05D003476 ORTHO05D004057 1.2e-06 57.4 30 80.0
Cc02_g06900 Coffea canephora HOM05D003476 ORTHO05D004057 5.8e-06 55.1 40 62.5
HanXRQChr08g0222281 Helianthus annuus HOM05D003476 ORTHO05D004057 5.8e-06 55.1 35 68.6
Sopen04g028030 Solanum pennellii HOM05D003476 ORTHO05D004057 9.9e-06 54.3 46 63.0


User provided reference genes

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