Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 6.2e-277 956.8 480 100.0
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.1e-248 862.1 480 89.8
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 4.2e-241 837.8 480 86.0
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 4.5e-235 817.8 480 83.8
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 8.8e-215 750.4 478 75.9
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.1e-206 723.4 478 74.7
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 5.0e-202 708.0 467 74.7
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 2.1e-200 702.6 467 73.7
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.8e-196 689.5 467 73.4
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.8e-196 689.5 471 72.4
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 4.1e-196 688.3 478 71.3
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 4.1e-196 688.3 485 70.1
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.3e-196 688.0 467 73.2
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.0e-195 686.0 467 73.7
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.5e-195 685.3 467 73.2
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 5.9e-195 684.5 484 69.4
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 1.7e-194 682.9 490 69.8
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.8e-194 681.8 467 73.4
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.0e-194 681.4 467 73.2
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 7.2e-193 677.6 466 71.0
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 9.4e-193 677.2 480 69.8
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 2.1e-192 676.0 466 71.0
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.7e-192 675.6 467 70.0
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 8.0e-192 674.1 467 69.8
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.8e-191 672.9 484 69.0
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.8e-188 662.9 467 70.2
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.4e-188 662.5 474 69.4
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 7.0e-188 661.0 481 68.6
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-187 660.2 467 70.0
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 5.9e-187 657.9 465 68.2
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.9e-186 655.6 464 68.8
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 5.0e-186 654.8 480 66.7
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 2.5e-185 652.5 480 66.7
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.2e-185 651.0 480 66.9
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 9.5e-185 650.6 481 68.2
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.0e-182 642.9 471 66.9
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 3.7e-181 638.6 474 68.1
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 8.3e-181 637.5 485 65.4
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 4.1e-180 635.2 470 66.0
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.2e-179 633.6 480 66.5
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.5e-179 631.7 471 66.0
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 5.9e-179 631.3 479 65.3
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.0e-178 630.6 465 67.7
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.5e-177 626.7 481 65.9
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 2.5e-177 625.9 481 64.0
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 5.6e-177 624.8 493 64.1
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 7.3e-177 624.4 472 64.6
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 2.8e-176 622.5 454 68.7
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 4.7e-176 621.7 483 65.0
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 8.3e-173 610.9 480 64.6
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 3.5e-171 605.5 465 64.9
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 4.6e-171 605.1 461 65.5
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 4.6e-171 605.1 470 63.8
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 4.7e-168 595.1 479 62.6
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 8.0e-168 594.3 484 63.2
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.1e-167 594.0 469 64.8
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 4.0e-167 592.0 482 61.2
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 6.4e-165 584.7 475 60.8
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 4.1e-164 582.0 486 62.3
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 2.1e-163 579.7 474 62.0
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 6.0e-163 578.2 481 58.6
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 3.0e-162 575.9 478 59.8
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 3.9e-162 575.5 472 62.5
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 7.3e-161 571.2 482 60.6
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.6e-160 570.1 472 62.3
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 5.2e-159 565.1 468 59.0
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 2.0e-158 563.1 469 61.0
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 7.6e-158 561.2 483 59.0
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 1.4e-156 557.0 465 60.4
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 2.4e-156 556.2 476 60.3
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 2.3e-154 549.7 473 59.2
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 4.3e-153 545.4 459 60.8
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.3e-153 545.4 473 59.0
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 9.6e-153 544.3 473 59.6
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 9.6e-153 544.3 483 58.0
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.6e-152 543.5 472 59.3
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 3.6e-152 542.3 470 58.9
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.6e-152 542.3 473 59.2
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 2.6e-150 536.2 457 58.4
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.4e-150 535.8 472 57.8
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.8e-150 535.0 469 58.0
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 9.9e-150 534.3 459 59.5
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 1.1e-148 530.8 469 58.0
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.1e-148 530.8 473 59.0
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 2.1e-147 526.6 473 57.9
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 2.1e-147 526.6 469 56.7
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.6e-147 525.4 467 57.2
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 6.9e-143 511.5 467 55.2
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 4.9e-141 505.4 467 56.1
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.4e-140 503.8 467 55.0
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.2e-139 500.7 467 54.4
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-139 500.7 467 56.5
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.2e-139 500.7 468 54.1
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.6e-139 500.4 467 56.3
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.5e-139 499.2 407 60.2
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 1.0e-138 497.7 472 54.2
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 2.3e-138 496.5 467 55.9
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 2.3e-138 496.5 468 56.4
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 3.9e-138 495.7 467 56.7
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 5.1e-138 495.4 484 52.3
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 6.6e-138 495.0 468 55.8
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.1e-137 494.2 468 54.5
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-137 493.8 467 56.3
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 5.6e-137 491.9 467 54.2
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 3.6e-136 489.2 467 55.2
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 4.8e-136 488.8 400 59.8
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 4.0e-135 485.7 478 52.1
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.3e-133 480.7 466 54.9
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 2.9e-133 479.6 469 53.7
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 3.8e-133 479.2 470 52.1
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 3.2e-132 476.1 468 52.8
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.2e-131 474.2 454 54.6
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-131 474.2 470 53.4
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.2e-131 474.2 476 50.8
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 2.1e-131 473.4 468 52.4
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 3.5e-131 472.6 467 54.2
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 4.6e-131 472.2 467 51.6
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 7.9e-131 471.5 468 52.4
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 7.9e-131 471.5 468 52.1
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 2.3e-130 469.9 466 54.3
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 3.9e-130 469.2 468 52.4
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 3.9e-130 469.2 468 52.4
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 3.9e-130 469.2 479 49.9
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 6.7e-130 468.4 461 52.1
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 3.3e-129 466.1 466 53.6
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 3.3e-129 466.1 467 52.9
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 7.4e-129 464.9 444 54.5
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 4.8e-128 462.2 467 53.3
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 8.1e-128 461.5 468 53.0
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 8.1e-128 461.5 468 53.0
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 8.1e-128 461.5 461 51.8
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 2.4e-127 459.9 467 52.7
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 2.4e-127 459.9 467 52.7
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 4.0e-127 459.1 467 53.1
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 5.3e-127 458.8 321 69.5
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 5.3e-127 458.8 321 69.5
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 9.0e-127 458.0 467 52.2
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 2.0e-126 456.8 476 52.3
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 4.9e-125 452.2 468 51.9
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.1e-124 451.1 468 51.7
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 3.9e-122 442.6 469 51.4
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 5.7e-121 438.7 443 51.9
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 7.4e-121 438.3 430 52.6
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 3.4e-118 429.5 468 49.1
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 2.2e-117 426.8 473 49.3
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 4.3e-113 412.5 433 49.4
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.9e-108 397.1 440 47.0
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.7e-96 357.5 444 43.7
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.1e-95 354.8 488 40.8
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.3e-95 352.4 444 43.7
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 7.0e-95 352.1 435 42.8
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 3.5e-94 349.7 468 44.4
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.0e-90 336.3 439 39.9
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 4.5e-86 322.8 337 52.8
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-81 307.8 354 48.9
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 7.7e-78 295.4 205 71.7
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.5e-70 270.0 350 39.7
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 4.1e-63 246.5 209 56.9
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 9.5e-60 235.3 203 55.2
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.2e-59 235.0 203 55.2
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 2.5e-52 210.7 221 50.7
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 9.5e-52 208.8 163 58.3
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-46 191.8 165 60.6
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.6e-44 183.0 309 37.5
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 4.9e-32 143.3 137 52.6
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 7.8e-30 136.0 287 37.6
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 5.6e-20 103.2 92 56.5
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 2.6e-17 94.4 88 54.5
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 2.4e-15 87.8 90 52.2
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 4.2e-15 87.0 171 36.3
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 3.0e-13 80.9 110 40.0
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-07 61.6 38 68.4
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 1.6e-06 58.5 65 53.8
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.6e-06 58.5 67 41.8
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 7.9e-06 56.2 88 34.1


User provided reference genes

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