Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 0.0e+00 1232.6 630 100.0
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 3.7e-306 1054.3 638 87.0
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 7.7e-243 844.0 638 70.1
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 6.9e-236 820.8 573 75.6
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.6e-232 809.7 545 78.5
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 1.8e-223 779.6 627 64.3
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 2.2e-221 772.7 640 66.4
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 6.3e-221 771.2 643 63.9
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 2.0e-219 766.1 641 64.4
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.0e-219 766.1 636 62.6
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 5.5e-217 758.1 636 62.1
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.8e-215 753.1 637 63.6
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 8.8e-215 750.7 641 61.3
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 2.0e-214 749.6 643 63.1
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 5.7e-214 748.0 633 62.6
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 2.8e-213 745.7 641 62.9
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 1.4e-212 743.4 644 62.4
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 2.4e-212 742.7 641 61.8
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 2.0e-211 739.6 631 60.2
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 2.7e-211 739.2 642 62.5
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 1.3e-210 736.9 622 63.2
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.7e-210 736.5 683 59.7
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 9.4e-209 730.7 647 61.7
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 2.3e-207 726.1 623 61.8
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 3.0e-207 725.7 635 62.2
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 1.4e-204 716.8 639 61.5
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 4.5e-203 711.8 632 59.8
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 4.5e-203 711.8 623 61.5
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 7.7e-203 711.1 640 60.5
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 1.3e-202 710.3 625 60.3
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.3e-202 710.3 636 59.6
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.3e-202 710.3 645 59.7
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 1.3e-202 710.3 643 60.3
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.2e-200 703.7 622 59.3
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 1.6e-200 703.4 638 58.9
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 2.8e-200 702.6 640 59.8
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 3.6e-200 702.2 639 59.2
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 1.4e-199 700.3 634 59.3
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 2.3e-199 699.5 638 59.9
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 3.0e-199 699.1 636 59.6
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 1.2e-198 697.2 627 60.3
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 6.4e-197 691.4 580 63.4
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 1.1e-196 690.6 636 59.3
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.1e-196 688.7 688 55.2
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 1.5e-193 680.2 627 58.4
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 5.6e-193 678.3 638 58.0
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 2.3e-191 672.9 641 58.5
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.5e-190 670.2 634 56.5
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 2.6e-190 669.5 640 56.2
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 3.4e-190 669.1 641 57.7
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 6.0e-187 658.3 624 56.9
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 7.8e-187 657.9 599 58.9
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.3e-186 657.1 645 56.3
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 8.6e-186 654.4 646 55.9
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 1.5e-185 653.7 631 57.7
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 3.3e-185 652.5 642 56.9
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 4.3e-185 652.1 633 56.1
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 4.3e-185 652.1 631 56.1
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 9.5e-185 651.0 657 57.4
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 2.8e-184 649.4 658 55.0
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 6.2e-184 648.3 610 58.7
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 2.2e-181 639.8 637 53.4
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.4e-180 637.1 621 55.9
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 1.9e-180 636.7 631 58.2
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.4e-180 636.3 650 55.5
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 2.4e-180 636.3 636 54.4
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 5.4e-180 635.2 595 58.7
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 2.7e-179 632.9 621 56.0
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.6e-176 623.6 612 54.9
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 2.8e-176 622.9 498 66.9
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 2.3e-175 619.8 646 55.4
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 2.3e-175 619.8 644 54.3
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.2e-174 617.5 639 52.4
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 4.4e-174 615.5 628 52.4
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.2e-173 613.2 562 58.0
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 6.4e-173 611.7 630 54.4
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 7.1e-172 608.2 656 52.0
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 1.2e-171 607.4 594 56.6
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 6.0e-171 605.1 634 52.2
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 2.3e-170 603.2 638 51.1
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 5.1e-170 602.1 633 52.1
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 6.6e-170 601.7 646 54.3
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 8.6e-170 601.3 634 54.3
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 1.9e-169 600.1 631 53.4
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 4.3e-169 599.0 622 54.3
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 9.6e-169 597.8 621 52.7
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 6.2e-168 595.1 709 50.2
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 6.2e-168 595.1 630 52.1
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.1e-167 594.3 642 50.2
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 4.0e-167 592.4 632 53.2
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 8.9e-167 591.3 619 51.5
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 8.9e-167 591.3 619 51.5
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 2.6e-166 589.7 619 51.4
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 2.6e-166 589.7 583 54.9
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 3.4e-166 589.3 570 58.1
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 4.4e-166 589.0 622 52.6
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 5.8e-166 588.6 515 60.4
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.3e-165 587.4 636 50.6
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.2e-164 582.8 637 51.8
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 4.2e-164 582.4 621 51.4
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 4.2e-164 582.4 621 51.4
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 5.4e-164 582.0 559 56.9
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 3.5e-163 579.3 632 51.1
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 1.0e-162 577.8 661 52.3
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.0e-162 577.8 597 52.3
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 5.1e-162 575.5 637 50.9
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 8.7e-162 574.7 491 60.7
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 4.8e-160 568.9 637 50.5
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 1.8e-159 567.0 670 49.0
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 2.6e-158 563.1 593 51.1
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 4.4e-158 562.4 639 49.3
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 5.8e-158 562.0 496 60.7
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.7e-155 553.1 565 55.0
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 6.6e-154 548.5 630 50.5
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 3.3e-153 546.2 579 51.8
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 5.6e-153 545.4 636 49.8
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 1.1e-151 541.2 500 58.0
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 3.4e-150 536.2 629 48.8
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 6.4e-149 531.9 663 45.9
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 2.4e-143 513.5 568 48.9
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 1.2e-142 511.1 521 54.7
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 5.5e-140 502.3 616 46.8
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 7.1e-140 501.9 522 53.3
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 5.0e-133 479.2 525 51.4
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 3.3e-129 466.5 634 45.9
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.2e-124 448.7 423 57.4
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 2.3e-122 443.7 481 50.5
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 4.5e-118 429.5 635 44.4
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 5.9e-118 429.1 468 51.3
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 5.5e-116 422.5 545 45.5
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.6e-115 421.0 489 48.1
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.6e-115 421.0 489 48.1
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 7.4e-113 412.1 630 41.7
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 5.9e-110 402.5 635 40.3
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 1.4e-106 391.3 504 46.8
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 4.0e-106 389.8 576 41.8
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 2.4e-103 380.6 390 52.6
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.9e-71 274.6 494 36.8
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 1.9e-71 274.6 681 32.2
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 8.1e-67 259.2 344 43.3
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 3.4e-57 227.3 302 48.0
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 8.1e-51 206.1 428 30.8
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 2.2e-48 198.0 195 48.7
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 3.6e-43 180.6 125 72.0
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.4e-23 115.5 158 36.1
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.3e-21 108.2 157 48.4
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 5.1e-21 107.1 64 76.6
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 9.3e-15 86.3 126 44.4
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.7e-08 65.5 55 58.2
SEGI_38081 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.1e-07 62.8 59 59.3
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-07 62.4 39 69.2
QL01p024866 Quercus lobata HOM05D004604 ORTHO05D005744 1.6e-06 58.9 70 52.9
QL04p091051 Quercus lobata HOM05D004604 ORTHO05D013998 2.1e-06 58.5 70 51.4


User provided reference genes

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