Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 0.0e+00 1825.8 882 100.0
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 0.0e+00 1289.2 882 74.6
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.7e-262 909.1 849 55.8
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.8e-261 906.4 890 53.9
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 2.6e-257 892.5 891 53.8
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 7.2e-255 884.4 897 53.0
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.8e-250 869.8 873 53.3
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.6e-249 865.9 892 51.9
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.7e-248 863.2 866 52.3
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 9.4e-247 857.4 893 51.3
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 2.7e-246 855.9 893 51.4
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 2.2e-243 846.3 892 51.2
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 8.2e-243 844.3 889 51.0
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.4e-242 843.6 893 50.8
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 7.7e-241 837.8 850 52.5
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.6e-238 830.1 889 50.4
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.0e-237 827.4 855 51.1
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 2.6e-236 822.8 927 48.9
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 4.4e-236 822.0 892 50.7
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 9.7e-236 820.8 894 49.8
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.3e-235 820.5 890 50.8
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 6.3e-235 818.1 885 50.3
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.3e-235 818.1 889 50.6
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 8.2e-235 817.8 888 48.8
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 4.1e-234 815.5 870 50.0
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.2e-233 813.9 828 52.2
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.6e-233 813.5 882 49.0
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.0e-232 810.8 901 49.6
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 2.9e-232 809.3 879 50.1
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 3.8e-232 808.9 880 49.8
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 3.2e-231 805.8 893 50.2
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 5.5e-231 805.1 892 49.8
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 5.5e-231 805.1 905 49.2
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 2.7e-230 802.7 872 49.4
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 3.6e-230 802.4 840 50.5
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 4.7e-230 802.0 864 50.0
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 8.0e-230 801.2 884 48.2
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 6.7e-229 798.1 892 48.2
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 6.7e-229 798.1 891 47.9
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 8.8e-229 797.7 836 50.2
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 3.3e-228 795.8 888 48.3
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 5.7e-228 795.0 889 48.3
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 9.7e-228 794.3 877 48.9
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.7e-227 793.5 869 49.1
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 4.8e-227 792.0 844 49.5
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.1e-226 790.8 896 47.4
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 4.1e-226 788.9 845 50.2
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 2.0e-225 786.6 894 47.8
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 2.7e-225 786.2 894 47.7
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 6.5e-224 781.6 893 49.3
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.2e-223 779.2 847 49.9
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 7.2e-223 778.1 891 47.6
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.6e-222 776.9 848 50.1
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 8.0e-222 774.6 836 49.2
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.0e-222 774.6 848 50.0
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.0e-221 774.2 906 46.1
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.4e-221 773.9 890 48.0
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 3.0e-221 772.7 845 48.3
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 4.4e-220 768.8 872 47.0
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 5.7e-220 768.5 836 47.8
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 7.5e-220 768.1 892 46.9
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 3.1e-218 762.7 894 47.1
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 5.4e-218 761.9 893 46.9
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 2.7e-217 759.6 843 48.4
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 4.5e-217 758.8 872 46.6
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.3e-216 756.5 894 46.3
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.1e-215 754.2 890 47.4
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.5e-215 753.8 780 51.5
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.5e-215 751.9 897 46.5
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 2.1e-214 750.0 895 46.3
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.1e-214 750.0 890 47.2
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.4e-213 747.3 891 46.6
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.4e-213 747.3 889 45.7
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 5.2e-213 745.3 854 48.2
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.4e-212 742.7 848 47.9
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 3.4e-212 742.7 783 51.2
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 2.5e-207 726.5 850 47.4
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.3e-207 726.1 851 46.8
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.0e-205 721.1 852 45.3
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.0e-204 716.8 842 45.7
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 7.5e-204 714.9 861 45.3
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 9.8e-204 714.5 899 44.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 6.4e-203 711.8 892 44.5
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 8.3e-203 711.4 841 46.1
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.4e-202 710.7 848 45.5
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 3.2e-202 709.5 836 45.6
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 4.1e-202 709.1 895 44.0
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.1e-202 709.1 795 49.2
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.2e-201 707.6 841 45.7
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.6e-201 707.2 755 50.3
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 2.0e-201 706.8 845 45.8
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.0e-200 704.5 842 46.1
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 3.0e-200 703.0 848 45.0
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 3.0e-200 703.0 848 45.0
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.1e-199 701.0 848 45.0
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.9e-199 700.3 852 44.8
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.9e-199 700.3 839 44.8
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.3e-199 699.5 886 43.7
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 4.3e-199 699.1 839 45.2
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 9.5e-199 698.0 892 43.0
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.6e-198 697.2 902 44.1
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.4e-197 694.1 912 43.2
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-197 693.3 880 44.5
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 5.8e-196 688.7 876 44.2
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-195 687.2 930 43.2
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.2e-195 686.8 851 45.1
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 6.4e-195 685.3 853 44.1
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 6.4e-195 685.3 860 43.7
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.7e-193 679.9 854 43.8
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.7e-192 677.2 903 43.7
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 7.3e-191 671.8 835 45.6
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.6e-188 663.3 807 47.1
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.7e-187 660.6 842 42.8
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.9e-187 659.8 835 45.0
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.4e-186 656.8 759 48.0
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 3.3e-183 646.4 900 40.7
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 4.3e-183 646.0 895 42.3
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.2e-180 637.9 855 44.1
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 4.9e-179 632.5 844 42.9
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 4.9e-179 632.5 845 44.0
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.1e-178 631.3 837 42.7
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.1e-178 629.4 847 42.7
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 8.7e-176 621.7 841 43.4
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.2e-169 601.3 720 47.6
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 6.6e-168 595.5 879 39.9
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 2.6e-164 583.6 699 46.9
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 7.9e-161 572.0 856 40.2
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 3.1e-157 560.1 888 39.1
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 7.6e-148 528.9 866 36.7
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 6.5e-147 525.8 700 42.7
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 4.6e-145 519.6 842 38.1
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.0e-123 448.7 412 54.4
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 3.8e-123 446.8 715 37.9
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.5e-114 418.3 505 45.1
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 8.0e-113 412.5 547 40.4
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 6.8e-104 382.9 466 44.6
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.8e-93 348.2 420 45.2
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.6e-89 335.1 465 41.5
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 4.6e-84 317.0 629 33.7
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.0e-83 315.8 321 53.0
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 3.3e-82 310.8 435 38.6
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 2.5e-74 284.6 433 36.5
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 6.0e-68 263.5 376 39.9
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 7.3e-66 256.5 714 28.7
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 1.4e-64 252.3 200 60.5
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 5.2e-64 250.4 156 72.4
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.9e-61 241.9 679 26.7
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.4e-61 241.5 213 57.3
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.5e-55 222.2 717 25.7
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 3.8e-54 217.6 253 49.4
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.0e-51 209.5 153 64.1
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.3e-51 209.1 238 51.3
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 9.9e-47 193.0 130 66.2
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.1e-45 189.5 129 73.6
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 4.6e-44 184.1 183 51.9
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 4.9e-38 164.1 99 74.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 4.9e-38 164.1 99 74.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 4.9e-38 164.1 99 74.7
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 1.4e-37 162.5 211 40.8
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.0e-35 156.4 175 49.7
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 8.2e-33 146.7 443 27.8
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.1e-29 136.3 257 34.2
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 9.3e-29 133.3 256 32.8
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.0e-27 129.8 153 42.5
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.1e-27 127.5 218 35.8
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 5.3e-24 117.5 323 29.4
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 1.0e-19 103.2 147 38.1
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.9e-19 101.3 73 65.8
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.5e-18 98.6 203 34.5
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 2.2e-14 85.5 46 80.4
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 1.8e-08 65.9 39 71.8


User provided reference genes

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