Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 2.5e-256 888.3 452 100.0
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 3.2e-243 844.7 450 95.6
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 1.2e-205 719.9 475 77.7
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 1.0e-204 716.8 457 78.8
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 6.6e-204 714.1 456 78.9
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 1.5e-203 713.0 454 79.5
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 9.5e-203 710.3 440 81.8
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 1.2e-200 703.4 447 78.7
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 4.4e-200 701.4 447 77.4
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 9.8e-200 700.3 449 77.5
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 1.3e-199 699.9 449 78.4
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 1.7e-199 699.5 451 76.9
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 8.3e-199 697.2 452 77.7
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 2.4e-198 695.7 450 77.8
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 5.4e-198 694.5 445 76.9
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 3.5e-197 691.8 444 77.7
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 6.0e-197 691.0 443 77.2
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 1.0e-196 690.3 443 76.3
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 1.7e-196 689.5 443 77.2
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 1.7e-196 689.5 445 76.6
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 2.3e-196 689.1 450 77.8
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 8.6e-196 687.2 447 75.8
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 1.9e-195 686.0 447 74.7
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 1.2e-194 683.3 452 75.2
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 1.8e-193 679.5 447 76.3
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 2.3e-193 679.1 451 74.9
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 8.9e-193 677.2 419 80.0
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 1.2e-192 676.8 437 76.7
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 1.2e-192 676.8 450 74.0
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 2.9e-191 672.2 447 74.9
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 6.4e-191 671.0 427 77.0
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 5.4e-190 667.9 413 78.9
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 7.0e-190 667.5 440 75.7
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 1.7e-188 662.9 442 74.9
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 9.5e-187 657.1 443 75.4
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 5.2e-185 651.4 446 74.0
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 2.0e-184 649.4 437 74.8
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 2.6e-184 649.0 447 70.9
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 2.6e-184 649.0 394 80.5
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 4.4e-184 648.3 448 73.2
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 1.3e-183 646.7 451 71.2
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 6.4e-183 644.4 447 70.5
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 6.4e-183 644.4 441 71.0
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 1.9e-182 642.9 428 72.0
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 4.1e-182 641.7 396 77.3
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 1.5e-179 633.3 420 73.1
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 1.5e-179 633.3 420 73.1
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 9.5e-179 630.6 395 77.0
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 9.5e-179 630.6 458 70.1
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 3.6e-178 628.6 454 69.2
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 1.1e-177 627.1 424 72.2
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 9.9e-176 620.5 453 68.7
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 3.5e-173 612.1 398 75.4
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 1.7e-172 609.8 654 52.6
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.9e-171 606.3 457 70.5
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 2.5e-171 605.9 427 69.6
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 7.3e-171 604.4 554 57.9
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 1.3e-167 593.6 394 70.8
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 1.1e-166 590.5 365 80.3
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 2.4e-166 589.3 440 65.7
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 4.5e-160 568.5 451 66.5
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.7e-159 566.6 444 66.7
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 5.4e-158 561.6 446 65.5
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 1.2e-157 560.5 444 64.4
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 1.9e-155 553.1 451 64.1
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 7.4e-155 551.2 338 78.7
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 9.6e-155 550.8 352 76.7
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 6.2e-154 548.1 434 65.2
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 6.2e-154 548.1 353 76.2
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 8.1e-154 547.7 456 64.0
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.5e-152 543.5 562 53.4
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 7.6e-152 541.2 376 69.1
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 3.2e-150 535.8 338 76.6
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 9.3e-150 534.3 444 63.5
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 3.1e-145 519.2 445 61.1
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 1.3e-143 513.8 431 58.7
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 3.5e-141 505.8 437 56.1
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 1.3e-140 503.8 320 75.6
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 2.4e-137 493.0 454 61.5
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 5.0e-135 485.3 432 56.2
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 7.2e-134 481.5 428 56.1
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.6e-133 480.3 488 56.4
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 6.7e-132 474.9 296 80.1
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 4.1e-129 465.7 291 78.7
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 5.5e-126 455.3 293 75.4
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 1.4e-121 440.7 294 74.8
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 1.1e-113 414.5 295 70.8
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 6.5e-103 378.6 447 46.5
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 3.6e-101 372.9 250 72.0
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 4.4e-99 365.9 301 63.5
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 8.9e-92 341.7 362 52.5
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 8.6e-87 325.1 433 40.6
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 7.3e-86 322.0 223 74.4
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 1.8e-84 317.4 229 68.1
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 5.6e-78 295.8 464 38.1
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 6.0e-72 275.8 171 79.5
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.3e-66 258.1 199 61.8
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 4.2e-57 226.5 153 76.5
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 2.3e-55 220.7 176 67.6
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 2.3e-47 194.1 418 31.3
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 3.0e-47 193.7 134 69.4
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 3.2e-41 173.7 121 71.1
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 4.6e-40 169.9 101 82.2
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 3.9e-39 166.8 111 76.6
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 2.5e-38 164.1 103 80.6
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 2.5e-38 164.1 103 80.6
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 2.1e-37 161.0 112 72.3
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 2.1e-32 144.4 75 88.0
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 1.3e-21 108.6 63 76.2
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 4.8e-13 80.1 217 28.1
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 8.2e-13 79.3 48 72.9
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 3.1e-12 77.4 49 73.5
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.5e-11 75.1 50 80.0
MD05G1238100 Malus domestica HOM05D007061 ORTHO05D009017 2.7e-08 64.3 43 72.1
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 1.0e-07 62.4 78 46.2


User provided reference genes

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