Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0132600 Salix brachista HOM05D000050 ORTHO05D023833 2.8e-61 238.4 119 100.0
Sabra08G0061600 Salix brachista HOM05D003183 ORTHO05D003697 5.3e-20 101.3 140 48.6
Potri.010G173100 Populus trichocarpa HOM05D003183 ORTHO05D003697 3.8e-18 95.1 50 90.0
Hma1.2p1_0153F.1_g067960 Hydrangea macrophylla HOM05D000050 ORTHO05D006094 9.1e-12 73.9 50 70.0
Potri.016G024800 Populus trichocarpa HOM05D000050 ORTHO05D006094 1.5e-11 73.2 50 72.0
Potri.006G026900 Populus trichocarpa HOM05D000050 ORTHO05D006094 3.4e-11 72.0 48 72.9
Prupe.7G024400 Prunus persica HOM05D000050 ORTHO05D006094 3.4e-11 72.0 48 72.9
TWI53G0709 Tripterygium wilfordii HOM05D000050 ORTHO05D006094 3.4e-11 72.0 49 73.5
ClCG04G004980 Citrullus lanatus HOM05D000050 ORTHO05D006094 4.5e-11 71.6 50 70.0
FAN19G1441 Fragaria x ananassa HOM05D000050 ORTHO05D006094 5.9e-11 71.2 56 64.3
FAN23G0798 Fragaria x ananassa HOM05D000050 ORTHO05D006094 5.9e-11 71.2 76 52.6
Actinidia37861 Actinidia chinensis HOM05D000050 ORTHO05D006094 7.7e-11 70.9 48 70.8
CSS0002447 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006094 7.7e-11 70.9 48 70.8
CSS0032591 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D023833 7.7e-11 70.9 48 70.8
COL.COLO4_22768 Corchorus olitorius HOM05D000050 ORTHO05D006094 7.7e-11 70.9 58 62.1
Nitab4.5_0000062g0370 Nicotiana tabacum HOM05D000050 ORTHO05D006094 7.7e-11 70.9 58 62.1
Nitab4.5_0005702g0010 Nicotiana tabacum HOM05D000050 ORTHO05D006094 7.7e-11 70.9 58 62.1
QL07p015372 Quercus lobata HOM05D000050 ORTHO05D006094 7.7e-11 70.9 48 72.9
PGR142G1375 Punica granatum HOM05D000050 ORTHO05D006094 1.0e-10 70.5 48 70.8
Duzib128G0594 Durio zibethinus HOM05D000050 ORTHO05D006094 1.3e-10 70.1 48 70.8
Migut.K00181 Erythranthe guttata HOM05D000050 ORTHO05D006094 1.3e-10 70.1 48 70.8
MD14G1093100 Malus domestica HOM05D000050 ORTHO05D006094 1.3e-10 70.1 48 70.8
Potri.008G083300 Populus trichocarpa HOM05D003183 ORTHO05D003697 1.3e-10 70.1 50 78.0
Thecc.05G130500 Theobroma cacao HOM05D000050 ORTHO05D006094 1.3e-10 70.1 48 70.8
arahy.Tifrunner.gnm1.ann1.Z0C2B4 Arachis hypogaea HOM05D000050 ORTHO05D006094 1.7e-10 69.7 49 69.4
arahy.Tifrunner.gnm1.ann1.Z6KCP2 Arachis hypogaea HOM05D000050 ORTHO05D006094 1.7e-10 69.7 49 69.4
CSS0021227 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D023833 1.7e-10 69.7 48 70.8
CANSAT21G2133 Cannabis sativa HOM05D000050 ORTHO05D006094 1.7e-10 69.7 48 72.9
Cpa.g.sc92.55 Carica papaya HOM05D000050 ORTHO05D006094 1.7e-10 69.7 48 72.9
Dinv02783 Davidia involucrata HOM05D000050 ORTHO05D006094 1.7e-10 69.7 48 70.8
Eucgr.K01701 Eucalyptus grandis HOM05D000050 ORTHO05D006094 1.7e-10 69.7 50 70.0
Gohir.A11G305200 Gossypium hirsutum HOM05D000050 ORTHO05D006094 1.7e-10 69.7 48 70.8
Gohir.D11G320600 Gossypium hirsutum HOM05D000050 ORTHO05D006094 1.7e-10 69.7 48 70.8
Gorai.007G350800 Gossypium raimondii HOM05D000050 ORTHO05D006094 1.7e-10 69.7 48 70.8
Peaxi162Scf00153g01027 Petunia axillaris HOM05D000050 ORTHO05D006094 1.7e-10 69.7 48 70.8
Sc13g0000750 Simmondsia chinensis HOM05D000050 ORTHO05D006094 1.7e-10 69.7 48 70.8
Solyc10g081160.2 Solanum lycopersicum HOM05D000050 ORTHO05D006094 1.7e-10 69.7 48 72.9
Sopen10g031660 Solanum pennellii HOM05D000050 ORTHO05D006094 1.7e-10 69.7 48 72.9
PGSC0003DMG400028110 Solanum tuberosum HOM05D000050 ORTHO05D006094 1.7e-10 69.7 48 72.9
TWI74G0450 Tripterygium wilfordii HOM05D000050 ORTHO05D006094 1.7e-10 69.7 48 72.9
vmacro07592 Vaccinium macrocarpon HOM05D000050 ORTHO05D006094 1.7e-10 69.7 49 67.3
EL10Ac3g07360 Beta vulgaris HOM05D000050 ORTHO05D006094 2.2e-10 69.3 59 55.9
CAN.G128.107 Capsicum annuum HOM05D000050 ORTHO05D006094 2.2e-10 69.3 48 70.8
Manes.02G219500 Manihot esculenta HOM05D000050 ORTHO05D006094 2.2e-10 69.3 48 70.8
Nn7g37175 Nelumbo nucifera HOM05D000050 ORTHO05D006094 2.2e-10 69.3 48 70.8
SGA_v2.0_scaffold66G22321 Striga asiatica HOM05D000050 ORTHO05D006094 2.2e-10 69.3 51 66.7
DCAR_013516 Daucus carota HOM05D000050 ORTHO05D006094 2.9e-10 68.9 48 70.8
MD12G1099900 Malus domestica HOM05D000050 ORTHO05D006094 2.9e-10 68.9 48 68.8
RhsimUnG0021100 Rhododendron simsii HOM05D000050 ORTHO05D006094 2.9e-10 68.9 48 68.8
SalBow6G5391 Salvia bowleyana HOM05D000050 ORTHO05D006094 2.9e-10 68.9 48 70.8
TAR633G2380 Trochodendron aralioides HOM05D000050 ORTHO05D006094 2.9e-10 68.9 48 68.8
Ciclev10012469m.g Citrus clementina HOM05D000050 ORTHO05D006094 3.8e-10 68.6 48 70.8
Duzib093G1108 Durio zibethinus HOM05D000050 ORTHO05D006094 3.8e-10 68.6 48 68.8
Migut.J01570 Erythranthe guttata HOM05D000050 ORTHO05D006094 3.8e-10 68.6 48 68.8
FAN26G1674 Fragaria x ananassa HOM05D000050 ORTHO05D006094 3.8e-10 68.6 50 68.0
HanXRQChr07g0200131 Helianthus annuus HOM05D000050 ORTHO05D006094 3.8e-10 68.6 48 68.8
Manes.09G074400 Manihot esculenta HOM05D000050 ORTHO05D006094 3.8e-10 68.6 48 70.8
CiPaw.09G161800 Carya illinoinensis HOM05D000050 ORTHO05D006094 5.0e-10 68.2 48 68.8
HanXRQChr14g0448081 Helianthus annuus HOM05D000050 ORTHO05D006094 5.0e-10 68.2 48 68.8
Atru.chr8.916 Acer truncatum HOM05D000050 ORTHO05D006094 6.5e-10 67.8 48 68.8
MSTRG.19762 Avicennia marina HOM05D000050 ORTHO05D006094 6.5e-10 67.8 48 68.8
EL10Ac5g10430 Beta vulgaris HOM05D000050 ORTHO05D023833 6.5e-10 67.8 50 64.0
AUR62018450 Chenopodium quinoa HOM05D000050 ORTHO05D006094 6.5e-10 67.8 50 64.0
ECA246G3238 Erigeron canadensis HOM05D000050 ORTHO05D006094 6.5e-10 67.8 48 68.8
Glyma.19G072800 Glycine max HOM05D000050 ORTHO05D006094 6.5e-10 67.8 48 68.8
Lsat_1_v5_gn_2_86281 Lactuca sativa HOM05D000050 ORTHO05D006094 6.5e-10 67.8 49 67.3
Lj2A416G30 Lonicera japonica HOM05D000050 ORTHO05D006094 6.5e-10 67.8 48 68.8
Oeu044221.1 Olea europaea HOM05D000050 ORTHO05D006094 6.5e-10 67.8 48 66.7
Sed0004724 Sechium edule HOM05D000050 ORTHO05D006094 6.5e-10 67.8 48 68.8
CiPaw.10G122100 Carya illinoinensis HOM05D000050 ORTHO05D006094 8.5e-10 67.4 48 68.8
Lsat_1_v5_gn_4_175421 Lactuca sativa HOM05D000050 ORTHO05D006094 8.5e-10 67.4 48 66.7
SGA_v2.0_scaffold69G23199 Striga asiatica HOM05D000050 ORTHO05D006094 8.5e-10 67.4 65 56.9
MSTRG.6282 Avicennia marina HOM05D000050 ORTHO05D006094 1.1e-09 67.0 48 68.8
CSS0029587 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006094 1.1e-09 67.0 48 66.7
AUR62020984 Chenopodium quinoa HOM05D000050 ORTHO05D006094 1.1e-09 67.0 48 66.7
Glyma.19G121700 Glycine max HOM05D000050 ORTHO05D006094 1.1e-09 67.0 48 70.8
Phvul.001G102600 Phaseolus vulgaris HOM05D000050 ORTHO05D006094 1.1e-09 67.0 48 70.8
GSVIVG01025833001 Vitis vinifera HOM05D000050 ORTHO05D006094 1.1e-09 67.0 53 62.3
ATR1096G087 Amborella trichopoda HOM05D000050 ORTHO05D006094 1.9e-09 66.2 48 64.6
DCAR_020624 Daucus carota HOM05D000050 ORTHO05D006094 1.9e-09 66.2 48 68.8
RcHm_v2.0_Chr3g0495201 Rosa chinensis HOM05D000050 ORTHO05D006094 1.9e-09 66.2 48 68.8
VMungo1383G0912 Vigna mungo HOM05D000050 ORTHO05D006094 1.9e-09 66.2 48 70.8
Ah.04g150110 Amaranthus hybridus HOM05D000050 ORTHO05D006094 2.5e-09 65.9 48 64.6
Lalb_Chr14g0365241 Lupinus albus HOM05D000050 ORTHO05D006094 2.5e-09 65.9 48 68.8
Lalb_Chr22g0358131 Lupinus albus HOM05D000050 ORTHO05D006094 2.5e-09 65.9 48 68.8
Lalb_Chr24g0400711 Lupinus albus HOM05D000050 ORTHO05D006094 2.5e-09 65.9 48 68.8
Zm00001eb389230 Zea mays HOM05D000050 ORTHO05D006094 2.5e-09 65.9 48 68.8
EL10Ac2g03323 Beta vulgaris HOM05D000050 ORTHO05D006094 3.2e-09 65.5 48 64.6
FvH4_1g29560 Fragaria vesca HOM05D000050 ORTHO05D006094 3.2e-09 65.5 48 68.8
CsaV3_4G027690 Cucumis sativus L. HOM05D000050 ORTHO05D006094 4.2e-09 65.1 48 68.8
Lj1g0018365 Lotus japonicus HOM05D000050 ORTHO05D006094 4.2e-09 65.1 48 68.8
MBI19_g10815_MAGBIO Magnolia biondii HOM05D000050 ORTHO05D006094 4.2e-09 65.1 48 64.6
Psat0s3111g0040 Pisum sativum HOM05D000050 ORTHO05D006094 4.2e-09 65.1 48 66.7
CDE08G1544 Ceratophyllum demersum HOM05D000050 ORTHO05D006094 5.5e-09 64.7 48 64.6
Cc06_g22700 Coffea canephora HOM05D000050 ORTHO05D006094 5.5e-09 64.7 48 66.7
ECA238G2534 Erigeron canadensis HOM05D000050 ORTHO05D006094 5.5e-09 64.7 48 66.7
Medtr7g087590 Medicago truncatula HOM05D000050 ORTHO05D006094 5.5e-09 64.7 48 66.7
Oeu009509.1 Olea europaea HOM05D000050 ORTHO05D006094 7.2e-09 64.3 48 64.6
HPP92_010290 Vanilla planifolia HOM05D000050 ORTHO05D006094 7.2e-09 64.3 48 66.7
Glyma.03G004200 Glycine max HOM05D000050 ORTHO05D006094 9.4e-09 63.9 48 66.7
MBI13_g32884_MAGBIO Magnolia biondii HOM05D000050 ORTHO05D006094 9.4e-09 63.9 48 64.6
TPR.G23680 Trifolium pratense HOM05D000050 ORTHO05D006094 9.4e-09 63.9 48 64.6
THA.LOC104816492 Tarenaya hassleriana HOM05D000050 ORTHO05D006094 1.2e-08 63.5 48 66.7
Aqoxy1G00103 Aquilegia oxysepala HOM05D000050 ORTHO05D006094 1.6e-08 63.2 48 64.6
THA.LOC104826883 Tarenaya hassleriana HOM05D000050 ORTHO05D006094 1.6e-08 63.2 48 64.6
Os06g0660700 Oryza sativa ssp. japonica HOM05D000050 ORTHO05D006094 2.7e-08 62.4 51 58.8
Sed0007736 Sechium edule HOM05D000050 ORTHO05D006094 3.6e-08 62.0 48 64.6
THA.LOC104823160 Tarenaya hassleriana HOM05D000050 ORTHO05D006094 3.6e-08 62.0 48 62.5
PSO339G5524 Papaver somniferum HOM05D000050 ORTHO05D006094 4.7e-08 61.6 45 66.7
PSO384G4718 Papaver somniferum HOM05D000050 ORTHO05D006094 4.7e-08 61.6 45 66.7
A10p31070 Brassica napus HOM05D000050 ORTHO05D006094 7.9e-08 60.8 53 60.4
BraA10t45151Z Brassica rapa HOM05D000050 ORTHO05D006094 7.9e-08 60.8 53 60.4
Aa31LG11G5900 Aethionema arabicum HOM05D000050 ORTHO05D006094 1.0e-07 60.5 52 61.5
Zm00001eb274710 Zea mays HOM05D000050 ORTHO05D006094 1.0e-07 60.5 48 62.5
AL6G14860 Arabidopsis lyrata HOM05D000050 ORTHO05D006094 1.4e-07 60.1 48 64.6
AT5G05080 Arabidopsis thaliana HOM05D000050 ORTHO05D006094 1.4e-07 60.1 48 64.6
BcaC06g32219 Brassica carinata HOM05D000050 ORTHO05D006094 1.4e-07 60.1 48 64.6
C09p71600 Brassica napus HOM05D000050 ORTHO05D006094 1.4e-07 60.1 48 64.6
Carub.0006s0401 Capsella rubella HOM05D000050 ORTHO05D006094 1.4e-07 60.1 48 64.6
Thhalv10014464m.g Eutrema salsugineum HOM05D000050 ORTHO05D006094 1.4e-07 60.1 48 64.6
Sp6g37750 Schrenkiella parvula HOM05D000050 ORTHO05D006094 1.4e-07 60.1 48 64.6
CARHR208190 Cardamine hirsuta HOM05D000050 ORTHO05D006094 1.8e-07 59.7 45 66.7
HPP92_015381 Vanilla planifolia HOM05D000050 ORTHO05D006094 1.8e-07 59.7 48 60.4
HPP92_028547 Vanilla planifolia HOM05D000050 ORTHO05D006094 1.8e-07 59.7 48 60.4
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 3.9e-07 58.5 48 64.6
A03p02080 Brassica napus HOM05D000050 ORTHO05D006094 3.9e-07 58.5 45 64.4
C03p02430 Brassica napus HOM05D000050 ORTHO05D006094 3.9e-07 58.5 45 64.4
BolC3t12794H Brassica oleracea HOM05D000050 ORTHO05D006094 3.9e-07 58.5 45 64.4
BraA03t09576Z Brassica rapa HOM05D000050 ORTHO05D006094 3.9e-07 58.5 45 64.4
unitig_46.g18483 Utricularia gibba HOM05D000050 ORTHO05D006094 3.9e-07 58.5 48 56.2
HanXRQChr12g0380851 Helianthus annuus HOM05D000050 ORTHO05D006094 5.1e-07 58.2 39 69.2
MBI02_g35499_MAGBIO Magnolia biondii HOM05D000373 ORTHO05D011648 5.1e-07 58.2 48 60.4
HPP92_015180 Vanilla planifolia HOM05D000050 ORTHO05D006094 6.7e-07 57.8 45 62.2
unitig_37.g12771 Utricularia gibba HOM05D000050 ORTHO05D006094 8.8e-07 57.4 48 56.2
EL10Ac4g08097 Beta vulgaris HOM05D000050 ORTHO05D023833 1.1e-06 57.0 43 60.5
Mapoly0041s0074 Marchantia polymorpha HOM05D000050 ORTHO05D006094 2.6e-06 55.8 48 60.4
AagrBONN_evm.TU.Sc2ySwM_368.1453 Anthoceros agrestis HOM05D000050 ORTHO05D006094 3.3e-06 55.5 48 58.3
SMO118G0233 Selaginella moellendorffii HOM05D000050 ORTHO05D006094 5.7e-06 54.7 45 62.2


User provided reference genes

Program Settings