Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 0.0e+00 1156.7 564 100.0
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 0.0e+00 1130.5 564 97.0
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 0.0e+00 1116.7 562 96.1
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 0.0e+00 1112.4 564 95.2
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 2.2e-310 1068.1 563 90.8
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 5.5e-309 1063.5 561 90.4
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 1.6e-308 1062.0 561 90.2
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 6.1e-308 1060.1 561 90.6
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 1.0e-307 1059.3 564 90.8
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 3.9e-307 1057.4 561 90.6
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 5.2e-307 1057.0 564 90.4
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.6e-306 1054.7 561 89.8
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 2.6e-306 1054.7 561 89.8
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 2.6e-306 1054.7 561 89.8
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 2.8e-305 1051.2 561 89.3
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 2.8e-305 1051.2 561 89.3
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 8.2e-305 1049.7 561 88.8
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.8e-304 1048.5 562 89.3
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 4.1e-304 1047.3 562 88.8
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 9.1e-304 1046.2 562 89.7
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.2e-303 1045.8 561 89.5
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 1.6e-303 1045.4 561 90.0
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 2.0e-303 1045.0 561 88.6
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.0e-303 1045.0 562 89.1
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.6e-303 1044.6 562 88.8
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.6e-303 1044.6 561 88.8
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.6e-303 1044.6 561 89.1
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 3.5e-303 1044.3 561 88.8
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 1.0e-302 1042.7 561 88.8
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.3e-302 1042.3 561 88.9
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 561 88.2
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 561 88.2
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 561 87.9
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.9e-302 1041.2 561 88.9
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 3.8e-302 1040.8 562 89.0
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 3.8e-302 1040.8 562 88.8
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 6.5e-302 1040.0 562 88.8
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 1.1e-301 1039.3 561 88.6
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 1.1e-301 1039.3 561 88.6
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 2.5e-301 1038.1 564 88.3
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 3.2e-301 1037.7 561 87.9
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 1.2e-300 1035.8 561 88.2
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 2.1e-300 1035.0 561 87.2
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 8.0e-300 1033.1 561 88.6
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 561 87.9
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 561 87.0
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 1.8e-299 1031.9 561 87.0
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 5.2e-299 1030.4 561 88.1
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 5.2e-299 1030.4 562 88.3
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 6.7e-299 1030.0 561 87.0
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 561 87.0
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 561 87.0
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 561 87.3
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 5.7e-298 1026.9 561 87.7
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 562 87.5
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 561 87.2
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.7e-297 1025.4 561 87.0
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 3.7e-297 1024.2 561 87.2
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 3.7e-297 1024.2 561 86.1
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 8.2e-297 1023.1 561 87.7
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 3.5e-295 1017.7 565 86.9
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 5.9e-295 1016.9 566 86.9
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 2.2e-294 1015.0 554 87.9
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.5e-293 1011.5 552 86.4
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 4.2e-293 1010.7 561 84.7
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 1.6e-292 1008.8 562 86.5
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 3.6e-292 1007.7 557 87.1
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 4.7e-292 1007.3 562 85.1
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 8.0e-292 1006.5 562 85.6
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.0e-291 1006.1 562 85.9
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 1.4e-291 1005.7 552 86.1
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.8e-291 1005.4 560 85.2
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 2.3e-291 1005.0 561 84.8
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 4.0e-291 1004.2 561 84.5
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 6.8e-291 1003.4 561 84.0
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.2e-290 1002.7 562 84.7
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 5.7e-290 1000.3 550 86.2
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 8.3e-289 996.5 563 85.1
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.1e-288 996.1 563 84.9
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 4.1e-288 994.2 552 85.0
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 7.0e-288 993.4 563 85.1
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 7.0e-288 993.4 563 85.1
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 7.0e-288 993.4 563 85.1
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 1.6e-287 992.3 563 84.9
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.6e-287 992.3 549 85.8
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.6e-287 992.3 563 84.7
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 2.7e-287 991.5 563 84.5
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 3.5e-287 991.1 563 84.9
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 4.5e-287 990.7 563 84.4
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 4.5e-287 990.7 563 84.4
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 5.9e-287 990.3 550 85.5
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 7.7e-287 989.9 565 83.7
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.7e-286 988.8 563 84.2
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.9e-286 988.0 549 85.2
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 2.9e-286 988.0 551 85.3
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 3.8e-286 987.6 563 84.4
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 6.1e-284 980.3 563 84.2
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.0e-283 979.5 561 83.6
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.0e-283 979.5 562 82.7
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.8e-283 978.8 563 83.5
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 3.0e-283 978.0 563 82.6
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 4.0e-283 977.6 563 83.8
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 8.8e-283 976.5 563 83.7
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.5e-282 975.7 563 82.2
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 2.0e-282 975.3 562 82.4
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.0e-282 975.3 562 82.4
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 2.6e-282 974.9 563 82.6
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 4.4e-282 974.2 563 83.3
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 7.5e-282 973.4 534 86.1
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 9.8e-282 973.0 562 82.2
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 8.3e-281 969.9 562 84.0
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 1.6e-279 965.7 562 83.3
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 2.7e-279 964.9 562 82.4
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.7e-279 964.9 561 81.3
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 3.5e-279 964.5 561 81.6
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 5.9e-279 963.8 558 82.8
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 4.3e-277 957.6 561 80.9
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.0e-276 953.4 556 81.8
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.9e-275 949.9 552 82.6
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 1.1e-272 943.0 551 80.9
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 9.2e-272 939.9 563 82.4
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.6e-268 927.9 559 79.1
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 1.8e-267 925.6 554 79.4
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.1e-267 924.9 554 78.9
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 2.0e-263 912.1 553 79.0
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 3.5e-263 911.4 562 78.1
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 4.6e-263 911.0 524 82.1
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.7e-262 909.1 561 77.4
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 1.2e-260 902.9 556 76.4
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.3e-257 892.9 568 75.0
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 6.4e-257 890.6 560 74.6
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.5e-253 878.6 561 75.2
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 2.2e-249 865.5 557 77.9
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 5.4e-248 860.9 562 74.0
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 9.2e-248 860.1 557 75.0
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 7.8e-247 857.1 553 75.6
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.5e-245 852.8 561 72.9
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 3.9e-238 828.2 466 83.3
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.9e-237 825.9 561 71.3
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 9.3e-224 780.4 418 89.2
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.3e-213 745.3 425 83.1
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.8e-211 739.6 562 67.1
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 1.2e-207 726.9 562 66.4
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.4e-190 670.2 373 83.4
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 7.7e-178 627.9 541 55.1
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.2e-170 604.0 417 72.9
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 7.2e-168 594.7 328 83.8
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 5.7e-165 585.1 488 55.1
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 7.5e-165 584.7 523 52.2
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 2.3e-158 563.1 291 89.0
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 5.8e-149 531.9 418 59.1
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.5e-133 480.7 552 49.8
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 2.6e-133 479.9 318 72.3
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.9e-132 476.5 559 49.6
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.5e-128 464.2 467 55.0
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.3e-88 329.7 212 75.5
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 6.3e-87 325.9 549 38.3
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 1.2e-82 311.6 491 36.7
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 2.2e-68 264.2 151 78.8
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 1.6e-66 258.1 151 76.8
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 4.5e-61 240.0 166 67.5
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.3e-49 201.1 116 83.6
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 5.2e-49 199.9 133 76.7
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 8.3e-47 192.6 128 76.6
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 2.9e-44 184.1 166 62.7
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 1.1e-43 182.2 166 62.7
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 1.5e-43 181.8 117 71.8
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.9e-43 181.4 166 62.7
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 2.1e-42 177.9 166 62.0
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 4.4e-40 170.2 324 32.4
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 2.1e-34 151.4 496 26.4
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 3.1e-33 147.5 87 78.2
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 7.1e-30 136.3 213 41.8
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 2.5e-27 127.9 76 71.1
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.1e-25 122.5 83 68.7
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 1.1e-25 122.5 85 64.7
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 5.8e-24 116.7 184 42.9
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 7.8e-21 106.3 166 44.0
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 3.6e-18 97.4 59 67.8
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 4.6e-13 80.5 46 73.9
Cc08_g01180 Coffea canephora HOM05D000597 ORTHO05D006307 1.4e-06 58.9 179 26.3
Duzib187G1275 Durio zibethinus HOM05D000597 ORTHO05D006307 3.2e-06 57.8 99 29.3
C03p50690 Brassica napus HOM05D003778 ORTHO05D004418 5.4e-06 57.0 32 81.2
BolC3t17356H Brassica oleracea HOM05D003778 ORTHO05D004418 5.4e-06 57.0 32 81.2
THA.LOC104819113 Tarenaya hassleriana HOM05D000597 ORTHO05D000603 7.1e-06 56.6 172 24.4
PGR044G2525 Punica granatum HOM05D000597 ORTHO05D006307 9.3e-06 56.2 90 35.6


User provided reference genes

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