Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 7.6e-46 186.8 94 100.0
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 3.5e-19 98.2 95 57.9
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 4.6e-19 97.8 95 56.8
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 3.4e-14 81.6 97 45.4
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 1.7e-13 79.3 96 43.8
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.7e-13 79.3 95 47.4
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.7e-13 79.3 99 46.5
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 2.9e-13 78.6 94 46.8
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 2.9e-13 78.6 94 47.9
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 2.9e-13 78.6 94 47.9
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 2.9e-13 78.6 98 48.0
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 3.8e-13 78.2 94 46.8
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 3.8e-13 78.2 94 46.8
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 3.8e-13 78.2 93 45.2
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 5.0e-13 77.8 94 46.8
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 6.5e-13 77.4 94 46.8
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 8.5e-13 77.0 94 46.8
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 8.5e-13 77.0 92 45.7
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 1.4e-12 76.3 95 46.3
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.4e-12 76.3 93 46.2
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.9e-12 75.9 94 45.7
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.5e-12 75.5 96 45.8
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 2.5e-12 75.5 96 44.8
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 2.5e-12 75.5 94 47.9
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 4.2e-12 74.7 96 45.8
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 5.5e-12 74.3 94 45.7
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 7.2e-12 73.9 93 44.1
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 9.4e-12 73.6 94 45.7
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 1.2e-11 73.2 94 45.7
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.6e-11 72.8 92 48.9
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 2.7e-11 72.0 87 47.1
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 4.6e-11 71.2 96 43.8
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 4.6e-11 71.2 93 44.1
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 4.6e-11 71.2 93 44.1
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 6.1e-11 70.9 95 40.0
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 6.1e-11 70.9 100 45.0
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 6.1e-11 70.9 94 44.7
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 7.9e-11 70.5 103 45.6
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 7.9e-11 70.5 94 44.7
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 7.9e-11 70.5 94 44.7
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.0e-10 70.1 102 45.1
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.4e-10 69.7 91 47.3
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.8e-10 69.3 86 44.2
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.0e-10 68.6 97 43.3
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.0e-10 68.6 100 44.0
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 3.0e-10 68.6 100 42.0
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 3.0e-10 68.6 100 44.0
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.9e-10 68.2 86 43.0
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 3.9e-10 68.2 96 42.7
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 5.1e-10 67.8 93 43.0
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.8e-10 67.0 98 44.9
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.5e-09 66.2 98 43.9
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.0e-09 65.9 98 41.8
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 2.5e-09 65.5 96 40.6
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.3e-09 64.7 100 43.0
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 9.7e-09 63.5 95 40.0
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.3e-08 63.2 100 40.0
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 1.7e-08 62.8 100 41.0
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.7e-08 62.8 96 38.5
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 2.2e-08 62.4 98 37.8
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 2.8e-08 62.0 92 43.5
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 2.8e-08 62.0 90 42.2
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.8e-08 62.0 100 40.0
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 2.8e-08 62.0 94 39.4
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.8e-08 62.0 100 39.0
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 3.7e-08 61.6 98 40.8
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.8e-08 61.2 92 38.0
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 1.1e-07 60.1 98 34.7
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.4e-07 59.7 97 41.2
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 2.4e-07 58.9 94 40.4
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 2.4e-07 58.9 94 40.4
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 2.4e-07 58.9 102 38.2
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.4e-07 58.9 102 38.2
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.1e-07 58.5 102 38.2
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 6.9e-07 57.4 93 38.7
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 9.1e-07 57.0 97 38.1
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 9.1e-07 57.0 91 34.1
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.2e-06 56.6 98 38.8
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.2e-06 56.6 95 37.9
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 1.2e-06 56.6 101 39.6
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.5e-06 56.2 90 37.8
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.0e-06 55.8 107 35.5
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 3.4e-06 55.1 97 37.1
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 4.5e-06 54.7 94 37.2
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 5.9e-06 54.3 99 39.4
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 7.7e-06 53.9 85 40.0
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 7.7e-06 53.9 99 35.4


User provided reference genes

Program Settings