Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0123900 Salix brachista HOM05D007053 ORTHO05D008922 4.2e-184 647.9 330 100.0
Potri.010G162900 Populus trichocarpa HOM05D007053 ORTHO05D008922 4.5e-170 601.3 327 92.4
Manes.01G031400 Manihot esculenta HOM05D007053 ORTHO05D008922 1.1e-152 543.5 333 83.5
Dinv16695 Davidia involucrata HOM05D007053 ORTHO05D008922 3.5e-146 521.9 321 81.9
Atru.chr11.1705 Acer truncatum HOM05D007053 ORTHO05D008922 1.6e-143 513.1 327 78.6
CiPaw.06G089300 Carya illinoinensis HOM05D007053 ORTHO05D008922 2.3e-142 509.2 329 79.9
GSVIVG01001339001 Vitis vinifera HOM05D007053 ORTHO05D008922 3.1e-142 508.8 318 81.4
RcHm_v2.0_Chr4g0439031 Rosa chinensis HOM05D007053 ORTHO05D008922 4.0e-142 508.4 329 76.9
FAN07G1757 Fragaria x ananassa HOM05D007053 ORTHO05D008922 5.8e-141 504.6 330 76.1
FAN22G1358 Fragaria x ananassa HOM05D007053 ORTHO05D008922 7.5e-141 504.2 328 76.5
FAN22G2353 Fragaria x ananassa HOM05D007053 ORTHO05D008922 7.5e-141 504.2 330 76.1
Cfa008919 Carpinus fangiana HOM05D007053 ORTHO05D008922 4.9e-140 501.5 320 80.3
TAR629G2828 Trochodendron aralioides HOM05D007053 ORTHO05D008922 8.3e-140 500.7 318 80.2
Gorai.013G090300 Gossypium raimondii HOM05D007053 ORTHO05D008922 1.1e-139 500.4 330 78.2
Gohir.A13G079000 Gossypium hirsutum HOM05D007053 ORTHO05D008922 3.2e-139 498.8 330 77.9
Duzib248G0053 Durio zibethinus HOM05D007053 ORTHO05D008922 4.1e-139 498.4 323 77.4
CSS0030124 Camellia sinensis var. sinensis HOM05D007053 ORTHO05D008922 1.6e-138 496.5 329 77.5
AL1G39090 Arabidopsis lyrata HOM05D007053 ORTHO05D008922 2.1e-138 496.1 328 74.4
CSS0045311 Camellia sinensis var. sinensis HOM05D007053 ORTHO05D008922 2.1e-138 496.1 329 77.2
FvH4_4g30620 Fragaria vesca HOM05D007053 ORTHO05D008922 2.1e-138 496.1 330 75.2
Thecc.02G338500 Theobroma cacao HOM05D007053 ORTHO05D008922 2.1e-138 496.1 322 78.9
Actinidia33234 Actinidia chinensis HOM05D007053 ORTHO05D008922 2.7e-138 495.7 328 76.8
FAN17G2706 Fragaria x ananassa HOM05D007053 ORTHO05D008922 3.5e-138 495.4 330 75.2
Eucgr.B03188 Eucalyptus grandis HOM05D007053 ORTHO05D008922 7.8e-138 494.2 324 75.9
QL03p069977 Quercus lobata HOM05D007053 ORTHO05D008922 2.3e-137 492.7 324 78.1
Ciclev10031995m.g Citrus clementina HOM05D007053 ORTHO05D008922 6.6e-137 491.1 335 74.6
Sed0004632 Sechium edule HOM05D007053 ORTHO05D008922 6.6e-137 491.1 321 76.0
Aqoxy3G03518 Aquilegia oxysepala HOM05D007053 ORTHO05D008922 1.5e-136 490.0 327 75.2
Thhalv10008165m.g Eutrema salsugineum HOM05D007053 ORTHO05D008922 1.9e-136 489.6 328 74.4
AT1G26640 Arabidopsis thaliana HOM05D007053 ORTHO05D008922 3.3e-136 488.8 330 73.3
MELO3C002980.2 Cucumis melo HOM05D007053 ORTHO05D008922 5.6e-136 488.0 323 75.5
Carub.0001s2439 Capsella rubella HOM05D007053 ORTHO05D008922 2.8e-135 485.7 328 73.5
Lsat_1_v5_gn_8_46861 Lactuca sativa HOM05D007053 ORTHO05D008922 2.8e-135 485.7 317 77.3
PGR102G0611 Punica granatum HOM05D007053 ORTHO05D008922 3.6e-135 485.3 327 74.9
Ca_04893_v3 Cicer arietinum L. HOM05D007053 ORTHO05D008922 8.1e-135 484.2 318 77.0
ClCG09G022040 Citrullus lanatus HOM05D007053 ORTHO05D008922 1.1e-134 483.8 332 73.8
MD13G1067400 Malus domestica HOM05D007053 ORTHO05D008922 1.1e-134 483.8 324 76.5
CARHR025330 Cardamine hirsuta HOM05D007053 ORTHO05D008922 1.8e-134 483.0 322 74.8
HanXRQChr08g0211061 Helianthus annuus HOM05D007053 ORTHO05D008922 1.8e-134 483.0 318 76.1
Nn4g23303 Nelumbo nucifera HOM05D007053 ORTHO05D008922 2.3e-134 482.6 317 76.3
Aa31LG7G8460 Aethionema arabicum HOM05D007053 ORTHO05D008922 8.9e-134 480.7 328 73.2
TPR.G19934 Trifolium pratense HOM05D007053 ORTHO05D008922 2.6e-133 479.2 326 74.5
Sp1g22160 Schrenkiella parvula HOM05D007053 ORTHO05D008922 3.4e-133 478.8 328 72.0
Solyc04g005520.3 Solanum lycopersicum HOM05D007053 ORTHO05D008922 3.4e-133 478.8 319 76.2
Glyma.02G112200 Glycine max HOM05D007053 ORTHO05D008922 7.5e-133 477.6 318 77.0
Rhsim12G0133300 Rhododendron simsii HOM05D007053 ORTHO05D008922 9.9e-133 477.2 326 76.1
Sopen04g001540 Solanum pennellii HOM05D007053 ORTHO05D008922 1.3e-132 476.9 319 75.9
A09p40050 Brassica napus HOM05D007053 ORTHO05D008922 2.2e-132 476.1 328 72.6
THA.LOC104808621 Tarenaya hassleriana HOM05D007053 ORTHO05D008922 2.2e-132 476.1 317 74.1
Lj2g0014226 Lotus japonicus HOM05D007053 ORTHO05D008922 3.7e-132 475.3 318 75.8
Medtr5g042980 Medicago truncatula HOM05D007053 ORTHO05D008922 4.9e-132 474.9 327 74.0
MSTRG.7772 Avicennia marina HOM05D007053 ORTHO05D008922 6.4e-132 474.6 318 74.8
BolC5t31171H Brassica oleracea HOM05D007053 ORTHO05D008922 6.4e-132 474.6 328 72.0
C05p24370 Brassica napus HOM05D007053 ORTHO05D008922 8.3e-132 474.2 328 72.0
Lalb_Chr10g0098501 Lupinus albus HOM05D007053 ORTHO05D008922 1.1e-131 473.8 324 74.7
BraA09t39501Z Brassica rapa HOM05D007053 ORTHO05D008922 1.4e-131 473.4 328 72.0
Psat2g127520 Pisum sativum HOM05D007053 ORTHO05D008922 1.4e-131 473.4 324 74.1
Migut.L01233 Erythranthe guttata HOM05D007053 ORTHO05D008922 3.2e-131 472.2 322 73.9
PSO063G7037 Papaver somniferum HOM05D007053 ORTHO05D008922 3.2e-131 472.2 325 75.7
CANSAT64G1913 Cannabis sativa HOM05D007053 ORTHO05D008922 7.1e-131 471.1 328 73.8
Sc04g0007810 Simmondsia chinensis HOM05D007053 ORTHO05D008922 7.1e-131 471.1 330 73.9
BcaC05g26403 Brassica carinata HOM05D007053 ORTHO05D008922 9.2e-131 470.7 328 71.6
PSO063G1507 Papaver somniferum HOM05D007053 ORTHO05D008922 9.2e-131 470.7 326 75.2
Phvul.002G091000 Phaseolus vulgaris HOM05D007053 ORTHO05D008922 1.6e-130 469.9 318 75.2
Lj3A1033T59 Lonicera japonica HOM05D007053 ORTHO05D008922 2.7e-130 469.2 337 71.8
VMungo1215G2121 Vigna mungo HOM05D007053 ORTHO05D008922 7.8e-130 467.6 318 74.5
ECA233G1809 Erigeron canadensis HOM05D007053 ORTHO05D008922 3.9e-129 465.3 319 74.6
CAN.G765.42 Capsicum annuum HOM05D007053 ORTHO05D008922 7.3e-128 461.1 309 76.1
AUR62005859 Chenopodium quinoa HOM05D007053 ORTHO05D008922 1.2e-127 460.3 342 70.2
PGSC0003DMG400002850 Solanum tuberosum HOM05D007053 ORTHO05D008922 1.1e-126 457.2 330 71.8
Cc11_g12440 Coffea canephora HOM05D007053 ORTHO05D008922 6.8e-126 454.5 324 70.7
Haze_11947 Corylus avellana HOM05D007053 ORTHO05D008922 3.4e-125 452.2 319 74.9
COL.COLO4_27954 Corchorus olitorius HOM05D007053 ORTHO05D008922 5.8e-125 451.4 323 73.1
Hund06137 Selenicereus undatus HOM05D007053 ORTHO05D008922 1.7e-124 449.9 310 74.2
FAN12G2464 Fragaria x ananassa HOM05D007053 ORTHO05D008922 1.2e-122 443.7 282 77.7
CsaV3_5G025100 Cucumis sativus L. HOM05D007053 ORTHO05D008922 3.9e-121 438.7 283 76.3
arahy.Tifrunner.gnm1.ann1.8N8AS7 Arachis hypogaea HOM05D007053 ORTHO05D008922 8.1e-119 431.0 317 71.0
EL10Ac6g13278 Beta vulgaris HOM05D007053 ORTHO05D008922 1.4e-118 430.3 325 68.9
Peaxi162Scf00187g00127 Petunia axillaris HOM05D007053 ORTHO05D008922 4.0e-118 428.7 327 68.2
Nitab4.5_0011225g0030 Nicotiana tabacum HOM05D007053 ORTHO05D008922 3.4e-117 425.6 308 72.4
AUR62032851 Chenopodium quinoa HOM05D007053 ORTHO05D008922 1.3e-116 423.7 328 68.9
ATR0730G101 Amborella trichopoda HOM05D007053 ORTHO05D008922 6.4e-116 421.4 321 68.2
TWI79G1311 Tripterygium wilfordii HOM05D007053 ORTHO05D008922 6.2e-111 404.8 322 66.5
Nitab4.5_0000014g0210 Nicotiana tabacum HOM05D007053 ORTHO05D008922 5.8e-109 398.3 270 75.9
vmacro16354 Vaccinium macrocarpon HOM05D007053 ORTHO05D008922 4.9e-108 395.2 428 54.2
Zm00001eb370300 Zea mays HOM05D007053 ORTHO05D008922 4.9e-108 395.2 330 65.5
Prupe.1G280800 Prunus persica HOM05D007053 ORTHO05D008922 1.1e-107 394.0 321 64.8
Oeu021091.2 Olea europaea HOM05D007053 ORTHO05D008922 9.3e-107 391.0 389 58.4
SGA_v2.0_scaffold16G07742 Striga asiatica HOM05D007053 ORTHO05D008922 4.5e-101 372.1 345 58.6
Ah.02g129320 Amaranthus hybridus HOM05D007053 ORTHO05D008922 1.7e-100 370.2 349 60.5
unitig_699.g19912 Utricularia gibba HOM05D007053 ORTHO05D008922 1.4e-99 367.1 321 62.3
Pp3c3_35320 Physcomitrium patens HOM05D007053 ORTHO05D008922 7.1e-91 338.2 316 56.6
SMO116G0352 Selaginella moellendorffii HOM05D007053 ORTHO05D008922 1.4e-86 323.9 316 55.4
DCAR_030987 Daucus carota HOM05D007053 ORTHO05D008922 2.3e-81 306.6 229 69.4
MBI19_g40191_MAGBIO Magnolia biondii HOM05D007053 ORTHO05D008922 1.5e-80 303.9 205 74.6
Mapoly0180s0007 Marchantia polymorpha HOM05D007053 ORTHO05D008922 9.7e-80 301.2 319 52.0
AagrBONN_evm.TU.Sc2ySwM_228.2378 Anthoceros agrestis HOM05D007053 ORTHO05D008922 2.0e-69 266.9 293 50.9
QL03p070004 Quercus lobata HOM05D007053 ORTHO05D008922 2.2e-63 246.9 275 53.5
CBR_g29893 Chara braunii HOM05D007053 ORTHO05D008922 5.5e-59 232.3 349 41.0
Cre13.g579800 Chlamydomonas reinhardtii HOM05D007053 ORTHO05D008922 1.4e-54 217.6 308 40.6
CDE02G3282 Ceratophyllum demersum HOM05D007053 ORTHO05D008922 8.5e-52 208.4 184 61.4
arahy.Tifrunner.gnm1.ann1.L47GGJ Arachis hypogaea HOM05D007053 ORTHO05D008922 5.4e-46 189.1 163 62.0
Pp3c8_2060 Physcomitrium patens HOM05D007053 ORTHO05D008922 2.0e-45 187.2 179 53.1
FAN17G3123 Fragaria x ananassa HOM05D007053 ORTHO05D008922 1.4e-41 174.5 104 81.7
SEGI_12600 Sequoiadendron giganteum HOM05D007053 ORTHO05D008922 1.8e-41 174.1 119 66.4
CDE02G3739 Ceratophyllum demersum HOM05D007053 ORTHO05D008922 1.7e-36 157.5 106 71.7
MCO04G110 Micromonas commoda HOM05D007053 ORTHO05D008922 2.5e-19 100.5 228 34.6
Lsat_1_v5_gn_5_96721 Lactuca sativa HOM05D007053 ORTHO05D008922 3.0e-12 77.0 51 72.5
Lsat_1_v5_gn_1_96520 Lactuca sativa HOM05D007053 ORTHO05D008922 1.9e-11 74.3 50 64.0
SEGI_13989 Sequoiadendron giganteum HOM05D007053 ORTHO05D008922 2.8e-10 70.5 77 50.6
Os01g0764600 Oryza sativa ssp. japonica HOM05D007053 ORTHO05D008922 1.4e-09 68.2 84 48.8
AL2G14220 Arabidopsis lyrata HOM05D011085 ORTHO05D031413 2.4e-06 57.4 80 42.5


User provided reference genes

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