Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.0e-133 480.7 372 100.0
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.2e-75 287.7 380 75.0
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 7.3e-68 261.9 380 63.2
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.6e-65 253.4 372 71.2
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 4.5e-65 252.7 372 71.0
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 9.9e-65 251.5 372 71.0
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 6.9e-58 228.8 370 67.8
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 7.6e-57 225.3 249 93.2
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 9.3e-55 218.4 250 92.0
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 2.7e-54 216.9 240 93.8
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.1e-52 211.5 367 65.7
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 5.6e-52 209.1 278 87.8
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 5.6e-52 209.1 250 89.2
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 3.7e-51 206.5 237 92.8
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 3.7e-51 206.5 370 65.7
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 6.2e-51 205.7 362 67.1
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 8.2e-51 205.3 250 89.6
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.1e-50 204.9 251 89.2
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.8e-50 204.1 238 88.2
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 3.1e-50 203.4 250 90.0
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 3.1e-50 203.4 248 89.1
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 4.0e-50 203.0 245 90.6
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 6.9e-50 202.2 247 89.5
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 6.9e-50 202.2 247 89.5
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 6.9e-50 202.2 366 65.8
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.5e-49 201.1 243 90.5
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.5e-49 201.1 370 62.7
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.0e-49 200.7 243 90.1
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 2.0e-49 200.7 250 84.4
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.6e-49 200.3 245 88.2
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 2.6e-49 200.3 363 65.0
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 3.4e-49 199.9 251 88.8
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 4.5e-49 199.5 240 90.8
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 5.8e-49 199.1 240 90.8
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 5.8e-49 199.1 378 62.7
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 5.8e-49 199.1 242 89.3
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 5.8e-49 199.1 239 91.2
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 5.8e-49 199.1 245 89.4
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 5.8e-49 199.1 244 73.0
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 7.6e-49 198.7 242 91.7
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.0e-48 198.4 244 90.2
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 1.0e-48 198.4 251 88.4
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.0e-48 198.4 247 89.1
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.0e-48 198.4 250 88.4
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 1.0e-48 198.4 241 89.6
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.3e-48 198.0 240 91.2
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.3e-48 198.0 244 89.8
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.7e-48 197.6 245 89.0
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.7e-48 197.6 244 89.8
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.7e-48 197.6 244 89.8
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.2e-48 197.2 240 90.4
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 2.2e-48 197.2 240 90.4
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.2e-48 197.2 230 93.0
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.2e-48 197.2 256 87.5
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 2.2e-48 197.2 233 92.3
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 3.8e-48 196.4 370 62.4
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 3.8e-48 196.4 251 88.8
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.9e-48 196.1 360 65.3
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 4.9e-48 196.1 251 86.9
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 4.9e-48 196.1 249 88.0
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 4.9e-48 196.1 244 88.5
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 4.9e-48 196.1 252 87.3
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 4.9e-48 196.1 247 88.3
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 6.5e-48 195.7 240 90.0
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 6.5e-48 195.7 245 89.0
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 6.5e-48 195.7 241 90.0
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 8.4e-48 195.3 361 65.1
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 8.4e-48 195.3 251 87.3
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 8.4e-48 195.3 242 90.5
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 8.4e-48 195.3 250 87.6
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.1e-47 194.9 241 90.0
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 1.9e-47 194.1 246 89.0
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 1.9e-47 194.1 245 88.6
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.9e-47 194.1 239 90.4
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.5e-47 193.7 240 90.0
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.2e-47 193.4 249 87.6
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 3.2e-47 193.4 341 67.2
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 3.2e-47 193.4 245 89.0
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 4.2e-47 193.0 251 87.3
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 4.2e-47 193.0 251 87.3
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 5.5e-47 192.6 232 91.8
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 7.1e-47 192.2 238 89.9
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 7.1e-47 192.2 249 87.1
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 7.1e-47 192.2 370 64.1
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 7.1e-47 192.2 249 86.7
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 7.1e-47 192.2 256 73.8
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.2e-46 191.4 244 88.9
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 1.2e-46 191.4 238 89.5
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 1.2e-46 191.4 242 86.4
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.2e-46 191.4 227 93.4
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.6e-46 191.0 249 86.3
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.1e-46 190.7 241 87.6
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.7e-46 190.3 254 86.6
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 4.6e-46 189.5 238 89.5
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 4.6e-46 189.5 238 89.5
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 4.6e-46 189.5 247 87.9
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 4.6e-46 189.5 246 87.0
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 6.0e-46 189.1 238 89.5
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 7.9e-46 188.7 369 51.8
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 7.9e-46 188.7 241 88.4
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 1.0e-45 188.3 248 86.7
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.3e-45 188.0 239 87.9
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.3e-45 188.0 241 88.8
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.8e-45 187.6 243 86.4
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.8e-45 187.6 271 57.2
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 3.0e-45 186.8 254 86.2
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 5.1e-45 186.0 248 87.5
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 6.7e-45 185.7 408 46.6
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 8.7e-45 185.3 390 60.3
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.7e-45 185.3 246 86.2
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 8.7e-45 185.3 246 86.2
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.1e-44 184.9 253 85.0
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 1.5e-44 184.5 247 70.9
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 7.4e-44 182.2 269 65.4
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 7.4e-44 182.2 226 88.5
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 6.3e-43 179.1 254 67.3
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 6.3e-43 179.1 249 85.1
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.8e-42 177.6 220 89.5
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 9.0e-42 175.3 240 85.8
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.0e-41 174.1 244 81.1
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.6e-41 173.7 388 60.6
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 1.3e-40 171.4 360 62.5
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.7e-40 171.0 240 85.8
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.7e-40 171.0 240 85.8
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.9e-40 170.2 265 81.1
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 6.5e-40 169.1 98 87.8
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 3.2e-39 166.8 242 85.1
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 5.5e-39 166.0 253 78.3
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 7.2e-39 165.6 222 91.0
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 9.3e-39 165.2 253 77.1
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.2e-38 164.9 250 82.8
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.2e-38 164.9 98 83.7
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.6e-38 164.5 253 78.3
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 2.7e-38 163.7 102 79.4
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 2.7e-38 163.7 243 50.2
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.7e-38 163.7 253 79.4
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 3.6e-38 163.3 97 80.4
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 3.6e-38 163.3 97 80.4
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 3.6e-38 163.3 92 85.9
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 4.6e-38 162.9 241 83.0
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 4.6e-38 162.9 102 81.4
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.0e-37 161.8 101 80.2
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 5.1e-37 159.5 98 81.6
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.3e-36 156.8 102 78.4
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.3e-36 156.8 102 78.4
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 5.7e-36 156.0 247 82.6
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 9.7e-36 155.2 92 82.6
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 9.7e-36 155.2 258 76.4
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.7e-35 154.5 105 74.3
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 3.7e-35 153.3 244 83.2
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 4.8e-35 152.9 100 77.0
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 1.4e-34 151.4 248 78.2
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 4.1e-34 149.8 92 79.3
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.6e-33 147.1 252 58.7
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 3.8e-32 143.3 253 75.5
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.5e-28 131.3 255 72.9
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.5e-28 131.3 104 61.5
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 9.7e-28 128.6 73 82.2
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 3.4e-25 120.2 227 75.3
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 2.5e-23 114.0 71 78.9
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 8.8e-21 105.5 166 45.8
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.8e-19 99.8 320 51.9
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 7.0e-18 95.9 65 72.3
Oeu027875.1 Olea europaea HOM05D003751 ORTHO05D004765 7.0e-18 95.9 52 76.9
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 9.1e-18 95.5 248 69.8
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.5e-17 93.6 73 65.8
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 5.9e-17 92.8 64 64.1
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.5e-16 89.0 180 90.0
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.1e-15 88.6 64 62.5
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 1.9e-15 87.8 50 78.0
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.3e-13 80.9 77 54.5
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 1.5e-12 78.2 66 78.8
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 3.3e-12 77.0 41 82.9
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 3.3e-12 77.0 46 80.4
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 2.2e-11 74.3 65 64.6
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 2.8e-11 73.9 46 78.3
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.1e-10 72.0 48 77.1
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 2.0e-09 67.8 102 45.1
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.7e-08 64.7 102 43.1
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 1.5e-07 61.6 32 87.5
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 3.2e-07 60.5 41 75.6


User provided reference genes

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