Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 4.8e-58 227.6 116 100.0
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 9.7e-51 203.4 132 84.1
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 6.9e-49 197.2 132 81.8
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 4.2e-46 188.0 128 80.5
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 5.7e-43 177.6 131 74.8
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 2.2e-42 175.6 130 74.6
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 2.2e-42 175.6 131 74.0
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.2e-42 175.6 101 88.1
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 6.3e-42 174.1 123 76.4
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.8e-41 172.6 101 87.1
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.4e-41 172.2 123 74.8
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.4e-41 172.2 123 74.8
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 2.4e-41 172.2 123 74.8
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 3.4e-40 168.3 123 74.0
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.4e-40 168.3 108 81.5
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 1.0e-39 166.8 131 70.2
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 1.3e-39 166.4 131 72.5
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 2.2e-39 165.6 117 76.1
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 2.9e-39 165.2 117 76.1
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 3.8e-39 164.9 131 69.5
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 3.8e-39 164.9 115 76.5
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 5.0e-39 164.5 131 70.2
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 8.5e-39 163.7 126 69.8
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 1.1e-38 163.3 123 74.0
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 1.9e-38 162.5 131 69.5
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 2.5e-38 162.2 126 69.8
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 5.5e-38 161.0 123 72.4
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 5.5e-38 161.0 144 64.6
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 5.5e-38 161.0 144 64.6
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 5.5e-38 161.0 124 71.0
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 9.4e-38 160.2 120 70.8
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 1.2e-37 159.8 155 59.4
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 1.2e-37 159.8 155 59.4
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 1.6e-37 159.5 126 68.3
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 2.1e-37 159.1 119 71.4
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 2.7e-37 158.7 125 68.8
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 3.6e-37 158.3 116 75.9
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 3.6e-37 158.3 127 69.3
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 3.6e-37 158.3 129 68.2
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 3.6e-37 158.3 131 66.4
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 6.1e-37 157.5 123 70.7
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 7.9e-37 157.1 131 69.5
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 1.0e-36 156.8 136 66.9
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 1.0e-36 156.8 139 67.6
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 1.4e-36 156.4 131 68.7
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 1.4e-36 156.4 129 68.2
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 3.9e-36 154.8 131 66.4
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 3.9e-36 154.8 124 68.5
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 6.7e-36 154.1 131 68.7
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 6.7e-36 154.1 116 70.7
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 8.8e-36 153.7 138 62.3
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 1.5e-35 152.9 107 73.8
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 2.0e-35 152.5 138 65.2
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 2.6e-35 152.1 126 67.5
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 3.3e-35 151.8 116 72.4
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 3.3e-35 151.8 119 68.9
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 5.7e-35 151.0 128 67.2
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 1.3e-34 149.8 119 69.7
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.3e-34 149.8 119 71.4
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 1.3e-34 149.8 116 70.7
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 1.7e-34 149.4 124 63.7
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 2.2e-34 149.1 131 63.4
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 2.8e-34 148.7 113 70.8
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 3.7e-34 148.3 121 70.2
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 3.7e-34 148.3 113 74.3
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 6.3e-34 147.5 116 70.7
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 6.3e-34 147.5 120 69.2
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 6.3e-34 147.5 120 69.2
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 8.2e-34 147.1 119 64.7
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.1e-33 146.7 132 64.4
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 1.4e-33 146.4 116 70.7
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 1.8e-33 146.0 140 63.6
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 1.8e-33 146.0 131 64.9
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 2.4e-33 145.6 113 73.5
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 2.4e-33 145.6 128 64.1
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 3.1e-33 145.2 127 66.9
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 4.1e-33 144.8 115 67.8
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 4.1e-33 144.8 131 61.8
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 5.3e-33 144.4 127 65.4
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 9.1e-33 143.7 131 63.4
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 5.9e-32 141.0 116 67.2
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 3.8e-31 138.3 124 66.1
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.5e-30 136.3 165 51.5
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.5e-30 135.6 119 64.7
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 4.2e-30 134.8 118 63.6
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 5.5e-30 134.4 119 63.9
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.2e-29 133.3 119 63.0
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.6e-29 132.9 117 64.1
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 2.7e-29 132.1 173 52.0
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.8e-28 129.4 120 59.2
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 8.8e-28 127.1 122 57.4
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 2.6e-27 125.6 178 45.5
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 5.7e-27 124.4 116 59.5
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 5.7e-27 124.4 130 56.9
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 6.3e-26 120.9 121 58.7
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 8.2e-26 120.6 116 57.8
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.1e-25 120.2 129 55.0
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 1.1e-25 120.2 110 61.8
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 3.1e-25 118.6 118 55.9
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 7.0e-25 117.5 120 60.8
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 2.6e-24 115.5 115 54.8
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 7.7e-24 114.0 122 55.7
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 1.3e-23 113.2 122 55.7
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 2.9e-23 112.1 114 59.6
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 1.1e-22 110.2 114 58.8
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 1.1e-22 110.2 90 65.6
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.2e-21 106.7 88 63.6
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 1.2e-21 106.7 122 51.6
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 2.7e-21 105.5 122 51.6
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 2.7e-21 105.5 128 47.7
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 6.1e-21 104.4 100 62.0
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 1.0e-20 103.6 124 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 8.8e-20 100.5 108 53.7
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 7.5e-19 97.4 117 52.1
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 1.3e-18 96.7 56 85.7
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 2.2e-18 95.9 81 63.0
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 2.8e-18 95.5 108 51.9
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 1.1e-17 93.6 56 83.9
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 3.1e-17 92.0 85 60.0
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 5.9e-16 87.8 56 75.0
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 5.0e-15 84.7 178 36.5
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.1e-14 83.6 53 79.2
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 1.5e-14 83.2 108 49.1
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 4.2e-14 81.6 105 50.5
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 2.6e-11 72.4 50 70.0
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 4.8e-10 68.2 85 50.6
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 1.1e-09 67.0 48 68.8
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-09 67.0 61 60.7
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 7.0e-09 64.3 46 76.1
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 1.0e-07 60.5 41 75.6
Nn3g16162 Nelumbo nucifera HOM05D006060 ORTHO05D007268 9.5e-06 53.9 28 92.9


User provided reference genes

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