Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 0.0e+00 1171.8 624 100.0
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 0.0e+00 1087.0 626 89.6
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 2.7e-224 782.3 627 65.9
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 3.1e-220 768.8 629 66.1
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 9.0e-220 767.3 642 63.6
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 3.4e-219 765.4 636 64.5
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 1.3e-218 763.5 636 64.3
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.2e-216 756.9 629 64.1
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 2.1e-216 756.1 619 63.0
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.0e-215 753.8 624 66.3
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 5.7e-214 748.0 625 62.2
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 7.4e-214 747.7 624 61.9
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 9.7e-214 747.3 631 63.5
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 2.8e-213 745.7 631 64.0
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 5.3e-212 741.5 639 61.0
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 5.9e-211 738.0 625 62.4
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 7.7e-211 737.6 630 62.2
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.7e-210 736.5 624 61.4
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.2e-210 736.1 625 60.8
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 3.2e-209 732.3 624 62.7
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 7.2e-209 731.1 620 61.6
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 2.1e-208 729.6 626 66.9
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 6.1e-208 728.0 626 61.5
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 4.3e-206 721.8 607 60.5
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 9.7e-206 720.7 626 61.5
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 6.3e-205 718.0 629 60.9
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.1e-204 717.2 626 60.9
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 1.1e-204 717.2 628 59.1
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.1e-204 717.2 624 60.7
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 1.4e-204 716.8 630 60.2
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 2.4e-204 716.1 626 60.9
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 4.1e-204 715.3 623 60.7
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 5.3e-204 714.9 626 60.5
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 9.1e-204 714.1 625 61.0
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 2.0e-203 713.0 627 60.8
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 4.5e-203 711.8 631 59.7
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.8e-202 708.8 626 60.2
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 5.0e-202 708.4 631 59.0
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 6.5e-202 708.0 627 60.6
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 2.5e-201 706.1 609 59.9
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 9.4e-201 704.1 628 59.7
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 6.1e-200 701.4 625 59.4
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 3.9e-199 698.7 627 59.6
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 5.1e-199 698.4 623 57.6
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 3.3e-198 695.7 624 57.5
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 1.7e-197 693.3 576 63.7
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 1.7e-197 693.3 602 64.8
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 2.2e-197 693.0 627 58.7
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 8.2e-197 691.0 650 62.5
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 9.1e-196 687.6 624 57.9
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 9.1e-196 687.6 628 59.6
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 4.5e-195 685.3 622 58.2
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 7.7e-195 684.5 629 58.0
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 1.0e-194 684.1 627 57.4
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 6.5e-194 681.4 626 58.6
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 6.5e-194 681.4 625 58.2
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 8.5e-194 681.0 624 56.6
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 9.4e-193 677.6 629 58.0
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.6e-192 676.8 616 58.1
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 1.6e-192 676.8 688 58.9
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.6e-192 676.8 575 62.1
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 1.6e-192 676.8 621 57.2
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 2.1e-192 676.4 624 58.2
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 2.7e-192 676.0 623 57.8
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 2.3e-191 672.9 623 57.5
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 5.2e-191 671.8 625 57.8
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 2.0e-190 669.8 624 62.2
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 9.7e-190 667.5 643 55.5
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 4.8e-189 665.2 628 56.2
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 1.1e-188 664.1 613 57.3
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.4e-188 663.7 623 55.4
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 1.8e-188 663.3 621 54.9
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.4e-188 662.9 627 55.3
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 5.3e-188 661.8 614 56.5
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 4.5e-187 658.7 633 56.4
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 5.9e-187 658.3 628 55.6
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 1.5e-185 653.7 623 55.4
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 7.2e-185 651.4 633 56.2
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 9.4e-185 651.0 636 56.4
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.2e-184 650.6 613 54.2
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.2e-184 650.6 629 56.3
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.5e-182 643.7 636 58.6
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.6e-182 642.9 674 51.2
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 1.7e-181 640.2 617 53.8
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.4e-180 637.1 524 63.5
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 2.4e-180 636.3 616 53.9
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 3.1e-180 636.0 619 53.6
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.6e-179 633.6 646 57.7
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.6e-179 633.6 630 57.0
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.7e-179 632.9 646 51.9
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 8.0e-176 621.3 664 51.7
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 5.2e-175 618.6 624 59.1
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 3.4e-174 615.9 737 48.8
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 8.3e-173 611.3 624 53.7
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 5.4e-172 608.6 633 52.0
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 5.4e-172 608.6 624 53.7
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.2e-171 607.4 607 58.8
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 9.5e-169 597.8 626 58.5
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.0e-167 594.3 738 46.1
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 2.3e-159 566.6 646 47.8
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 3.9e-154 549.3 629 47.5
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.1e-151 541.2 599 47.6
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 1.0e-146 524.6 505 54.9
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.6e-144 517.3 662 49.4
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 2.8e-144 516.5 625 44.6
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 3.4e-142 509.6 597 45.4
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 1.6e-136 490.7 425 61.4
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.5e-108 397.1 418 53.1
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 3.2e-108 396.7 448 48.7
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 8.7e-106 388.7 388 51.8
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 2.1e-104 384.0 452 49.1
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.2e-104 382.1 416 52.2
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 1.4e-103 381.3 324 56.8
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.6e-102 377.1 418 51.4
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.4e-101 372.1 405 51.9
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.6e-99 366.3 420 49.8
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 1.5e-97 361.3 337 53.4
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.3e-93 348.2 418 49.5
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.3e-89 333.6 420 46.7
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.5e-84 317.4 409 46.5
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-79 302.0 419 44.4
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 1.8e-74 284.6 567 32.3
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.6e-70 271.6 574 30.3
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 3.2e-68 263.8 205 64.9
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 2.3e-66 257.7 254 54.3
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.6e-62 245.0 535 29.7
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.1e-60 238.8 510 30.2
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 9.8e-57 225.7 517 32.3
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 5.4e-55 219.9 168 67.3
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 6.6e-53 213.0 211 57.8
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 6.8e-50 203.0 240 47.5
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 1.2e-49 202.2 550 26.9
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 3.4e-49 200.7 167 61.1
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 4.6e-46 190.3 452 35.2
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 6.6e-37 159.8 134 60.4
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 9.8e-33 146.0 109 65.1
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.9e-28 131.7 96 66.7
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 1.3e-24 119.0 231 35.1
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.7e-24 118.6 313 34.2
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.1e-23 115.9 100 57.0
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 6.2e-19 100.1 104 50.0
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 1.4e-18 99.0 89 55.1
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 9.3e-15 86.3 169 37.9
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 4.8e-11 73.9 44 72.7
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 4.8e-11 73.9 44 72.7
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.1e-10 71.2 48 68.8
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 4.0e-10 70.9 96 45.8
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.5e-09 68.9 107 38.3
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 4.9e-08 63.9 58 48.3


User provided reference genes

Program Settings