Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 3.8e-169 598.2 331 100.0
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.3e-145 519.2 331 86.7
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.4e-118 430.3 332 77.7
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 2.8e-111 406.0 331 75.8
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 1.5e-104 383.6 334 73.1
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 5.1e-97 358.6 331 70.7
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 1.4e-91 340.5 335 69.0
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 1.4e-91 340.5 335 67.8
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 2.5e-91 339.7 333 68.8
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 7.9e-90 334.7 333 68.5
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 9.7e-88 327.8 335 66.0
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 9.7e-88 327.8 335 66.0
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.3e-87 327.4 335 66.3
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.7e-87 327.0 333 66.7
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 2.8e-87 326.2 334 68.3
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 3.7e-87 325.9 334 64.1
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.2e-85 320.9 330 67.0
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.3e-84 317.4 333 59.2
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.7e-84 317.0 334 68.3
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.3e-79 300.8 346 61.8
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 7.0e-78 295.0 333 63.7
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 1.7e-76 290.4 333 64.3
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.5e-75 287.3 339 54.6
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 1.3e-71 274.2 327 62.7
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 5.3e-70 268.9 332 60.2
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 1.2e-69 267.7 333 58.9
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 9.4e-67 258.1 353 58.4
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 6.1e-66 255.4 339 62.5
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.8e-65 253.8 337 57.3
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 2.3e-65 253.4 346 56.4
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 6.8e-65 251.9 359 55.4
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 1.5e-64 250.8 331 57.4
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.5e-64 250.8 357 56.3
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 3.4e-64 249.6 337 55.8
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 4.4e-64 249.2 347 49.9
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 9.8e-64 248.1 350 58.6
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.3e-63 247.7 331 59.2
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 3.7e-63 246.1 339 58.4
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 6.3e-63 245.4 336 54.8
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.4e-62 243.4 264 54.2
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 2.7e-61 240.0 356 55.6
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 4.5e-61 239.2 335 56.4
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 1.7e-60 237.3 328 56.4
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.9e-60 236.5 269 54.3
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 6.5e-60 235.3 331 53.2
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 1.1e-59 234.6 336 55.1
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 2.6e-56 223.4 329 44.1
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 1.4e-54 217.6 364 52.5
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 1.2e-53 214.5 334 54.2
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 4.5e-53 212.6 333 54.7
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 4.5e-53 212.6 333 54.7
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 5.9e-53 212.2 229 66.8
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.0e-52 211.5 341 55.7
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.7e-52 210.7 333 46.5
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.1e-51 208.0 319 55.8
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.3e-51 206.5 319 54.2
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 3.3e-51 206.5 346 52.3
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.6e-51 205.7 339 54.0
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 9.5e-51 204.9 345 52.5
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 1.7e-47 194.1 342 49.4
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 2.2e-47 193.7 301 48.8
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 3.7e-47 193.0 323 49.5
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 3.7e-47 193.0 323 49.5
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 4.9e-47 192.6 338 44.4
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 6.4e-47 192.2 331 48.0
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 6.4e-47 192.2 329 46.5
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 1.8e-46 190.7 385 47.0
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 5.4e-46 189.1 343 42.6
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 2.0e-45 187.2 384 46.6
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 7.8e-45 185.3 338 50.9
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 1.0e-44 184.9 321 43.3
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 1.3e-44 184.5 356 42.1
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.3e-44 183.7 255 62.7
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 2.3e-44 183.7 357 42.3
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 3.9e-44 183.0 337 45.7
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.1e-43 181.4 340 41.8
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.1e-43 181.4 345 50.4
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.9e-43 180.6 342 50.6
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 9.5e-43 178.3 335 46.6
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 9.5e-43 178.3 344 50.3
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 9.5e-43 178.3 344 50.3
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 9.5e-43 178.3 342 50.9
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 2.8e-42 176.8 338 40.5
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 4.7e-42 176.0 332 44.3
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.4e-41 174.5 332 41.6
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.3e-41 173.7 310 51.0
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.3e-39 167.9 312 48.4
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 2.9e-39 166.8 342 40.1
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 5.4e-38 162.5 341 43.1
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.0e-37 160.6 220 64.5
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 4.6e-37 159.5 329 42.9
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 6.0e-37 159.1 352 46.9
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 7.8e-37 158.7 350 43.1
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 7.8e-37 158.7 350 43.1
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 7.8e-37 158.7 350 43.1
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.1e-35 154.8 326 46.0
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 4.3e-35 152.9 310 47.1
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 9.5e-35 151.8 191 53.9
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 6.8e-33 145.6 328 40.2
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 1.5e-32 144.4 328 46.3
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 5.8e-32 142.5 335 42.1
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 7.5e-32 142.1 345 40.0
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.3e-31 141.4 347 43.8
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 2.2e-31 140.6 351 41.6
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 2.2e-31 140.6 351 41.6
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 2.2e-31 140.6 349 41.3
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 2.9e-31 140.2 353 41.9
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 3.7e-31 139.8 311 38.3
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 8.3e-31 138.7 340 42.1
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.3e-31 138.7 351 42.2
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.1e-30 138.3 353 40.5
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 2.4e-30 137.1 341 43.4
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 3.2e-30 136.7 353 40.2
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 4.1e-30 136.3 350 43.1
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 2.1e-29 134.0 356 41.0
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 2.7e-29 133.7 343 38.5
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 3.5e-29 133.3 347 41.8
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 6.0e-29 132.5 342 39.2
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 1.3e-28 131.3 355 40.0
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 6.6e-28 129.0 342 37.7
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 1.5e-27 127.9 354 39.0
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.9e-27 127.5 336 36.3
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.9e-27 127.5 342 36.3
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 3.3e-27 126.7 350 40.3
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 3.3e-27 126.7 360 42.2
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 9.5e-27 125.2 355 39.7
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 1.2e-26 124.8 353 40.5
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.1e-26 124.0 334 35.6
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.4e-25 121.3 355 38.9
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 1.8e-25 120.9 355 38.9
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 3.1e-25 120.2 285 46.7
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 2.6e-24 117.1 349 35.5
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.4e-24 116.7 324 42.6
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 4.4e-24 116.3 351 35.9
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 1.7e-23 114.4 355 38.6
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 2.4e-22 110.5 351 40.5
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 6.0e-21 105.9 396 37.4
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 1.7e-20 104.4 304 42.1
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 2.3e-20 104.0 328 35.7
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 2.5e-19 100.5 340 32.9
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 1.2e-16 91.7 341 37.0
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 4.4e-16 89.7 336 39.0
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 2.1e-13 80.9 320 31.6
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 3.5e-13 80.1 322 33.5
TAR381G0317 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.0e-12 78.6 119 43.7
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 3.0e-12 77.0 305 29.5
TAR627G0820 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.9e-11 74.3 116 44.8
TAR629G3385 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.4e-09 68.2 147 38.1
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 4.0e-09 66.6 275 30.2
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 6.9e-09 65.9 277 30.0
Lj5C38T14 Lonicera japonica HOM05D001488 ORTHO05D001456 4.9e-07 59.7 225 30.7
BraA10t44637Z Brassica rapa HOM05D001488 ORTHO05D012414 1.4e-06 58.2 233 29.6
Carub.0003s1356 Capsella rubella HOM05D001488 ORTHO05D001456 1.9e-06 57.8 232 30.2
Duzib192G0094 Durio zibethinus HOM05D001488 ORTHO05D001456 1.9e-06 57.8 238 29.0
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 3.2e-06 57.0 300 29.0


User provided reference genes

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