Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0116500 Salix brachista HOM05D005991 ORTHO05D007408 4.0e-91 338.2 184 100.0
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 3.7e-73 278.5 178 87.1
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 2.5e-32 142.9 183 48.1
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 2.1e-31 139.8 193 44.6
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 7.9e-31 137.9 185 47.6
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.5e-29 133.7 185 47.0
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 2.8e-28 129.4 184 44.6
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 1.3e-25 120.6 187 44.4
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 6.9e-19 98.2 167 39.5
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 1.3e-17 94.0 181 38.1
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 2.2e-17 93.2 106 47.2
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 1.1e-16 90.9 106 50.0
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 5.5e-16 88.6 106 49.1
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 2.7e-15 86.3 106 43.4
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 7.9e-15 84.7 111 45.9
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 1.0e-14 84.3 125 44.0
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 1.8e-14 83.6 106 47.2
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 6.7e-14 81.6 105 53.3
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 1.5e-13 80.5 106 41.5
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 4.4e-13 79.0 114 45.6
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 5.7e-13 78.6 106 47.2
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 7.4e-13 78.2 128 39.8
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 7.4e-13 78.2 128 39.1
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 1.3e-12 77.4 108 41.7
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.7e-12 77.0 111 42.3
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 2.2e-12 76.6 110 41.8
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 4.8e-12 75.5 133 39.8
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 1.4e-11 73.9 126 38.9
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 1.4e-11 73.9 177 35.6
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 1.4e-11 73.9 119 42.9
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 2.4e-11 73.2 133 40.6
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 4.1e-11 72.4 117 41.9
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 4.1e-11 72.4 116 42.2
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 4.1e-11 72.4 116 42.2
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 5.3e-11 72.0 119 42.0
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 5.3e-11 72.0 111 43.2
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 7.0e-11 71.6 101 41.6
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 9.1e-11 71.2 137 38.7
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 9.1e-11 71.2 136 38.2
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 1.2e-10 70.9 106 43.4
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 1.6e-10 70.5 136 36.0
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 2.6e-10 69.7 91 44.0
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 2.6e-10 69.7 110 40.0
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 4.5e-10 68.9 127 37.0
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 4.5e-10 68.9 116 39.7
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 5.9e-10 68.6 126 39.7
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 5.9e-10 68.6 116 40.5
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 7.7e-10 68.2 114 36.8
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 1.3e-09 67.4 112 37.5
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.3e-09 67.4 115 36.5
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 1.3e-09 67.4 115 34.8
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 1.7e-09 67.0 146 36.3
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.2e-09 66.6 91 44.0
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 2.2e-09 66.6 126 36.5
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 2.2e-09 66.6 115 33.0
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 2.2e-09 66.6 114 40.4
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 2.9e-09 66.2 106 39.6
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 2.9e-09 66.2 110 37.3
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 2.9e-09 66.2 106 43.4
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 3.8e-09 65.9 106 39.6
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 1.1e-08 64.3 115 31.3
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 1.1e-08 64.3 115 31.3
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 1.5e-08 63.9 111 36.9
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 1.5e-08 63.9 177 35.6
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 1.5e-08 63.9 106 37.7
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 2.5e-08 63.2 115 37.4
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 2.5e-08 63.2 115 37.4
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 2.5e-08 63.2 121 33.9
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 2.5e-08 63.2 116 34.5
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 4.2e-08 62.4 126 35.7
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 4.2e-08 62.4 110 37.3
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 4.2e-08 62.4 98 38.8
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 7.2e-08 61.6 129 34.9
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 7.2e-08 61.6 115 34.8
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 9.4e-08 61.2 115 36.5
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 1.2e-07 60.8 110 38.2
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 2.1e-07 60.1 119 31.9
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 2.1e-07 60.1 125 35.2
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 2.7e-07 59.7 115 33.9
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 3.6e-07 59.3 115 33.9
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 3.6e-07 59.3 114 35.1
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 4.7e-07 58.9 112 37.5
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 1.0e-06 57.8 119 32.8
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 1.0e-06 57.8 119 32.8
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 1.0e-06 57.8 119 33.6
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.4e-06 57.4 88 40.9
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 1.4e-06 57.4 106 43.4
GSVIVG01017610001 Vitis vinifera HOM05D005991 ORTHO05D007408 1.4e-06 57.4 78 43.6
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 3.0e-06 56.2 95 34.7
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 8.8e-06 54.7 118 30.5


User provided reference genes

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