Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0116400 Salix brachista HOM05D001970 ORTHO05D004069 5.5e-56 220.7 109 100.0
Sabra10G0116100 Salix brachista HOM05D001970 ORTHO05D004069 4.8e-44 181.0 109 82.6
Potri.010G150500 Populus trichocarpa HOM05D001970 ORTHO05D004069 3.8e-41 171.4 109 78.0
Sabra10G0115900 Salix brachista HOM05D001970 ORTHO05D004069 1.6e-39 166.0 109 76.1
Potri.010G151200 Populus trichocarpa HOM05D001970 ORTHO05D004069 4.1e-35 151.4 109 67.9
Potri.010G150800 Populus trichocarpa HOM05D001970 ORTHO05D004069 4.5e-26 121.3 104 55.8
Sabra10G0116300 Salix brachista HOM05D001970 ORTHO05D004069 1.0e-25 120.2 109 52.3
Os01g0516600 Oryza sativa ssp. japonica HOM05D001970 ORTHO05D004069 4.4e-21 104.8 98 48.0
Eucgr.B02212 Eucalyptus grandis HOM05D001970 ORTHO05D004069 9.8e-21 103.6 98 52.0
Aqoxy5G02736 Aquilegia oxysepala HOM05D001970 ORTHO05D004069 2.2e-20 102.4 98 51.0
Sabra10G0028300 Salix brachista HOM05D001970 ORTHO05D004069 3.7e-20 101.7 98 51.0
Manes.03G208900 Manihot esculenta HOM05D001970 ORTHO05D004069 4.9e-20 101.3 103 47.6
Manes.11G051025 Manihot esculenta HOM05D001970 ORTHO05D004069 4.9e-20 101.3 98 51.0
Nn3g21834 Nelumbo nucifera HOM05D001970 ORTHO05D004069 6.3e-20 100.9 98 50.0
CiPaw.01G133200 Carya illinoinensis HOM05D001970 ORTHO05D004069 8.3e-20 100.5 98 52.0
Phvul.009G108000 Phaseolus vulgaris HOM05D001970 ORTHO05D004069 1.4e-19 99.8 98 49.0
Potri.010G037500 Populus trichocarpa HOM05D001970 ORTHO05D004069 1.4e-19 99.8 98 50.0
Zm00001eb357750 Zea mays HOM05D001970 ORTHO05D004069 1.8e-19 99.4 98 45.9
ATR0693G141 Amborella trichopoda HOM05D001970 ORTHO05D004069 3.1e-19 98.6 98 50.0
CSS0034239 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 3.1e-19 98.6 106 49.1
Migut.N00021 Erythranthe guttata HOM05D001970 ORTHO05D004069 3.1e-19 98.6 97 49.5
Glyma.04G082200 Glycine max HOM05D001970 ORTHO05D004069 3.1e-19 98.6 98 50.0
PGR031G3476 Punica granatum HOM05D001970 ORTHO05D004069 3.1e-19 98.6 98 50.0
Rhsim04G0243300 Rhododendron simsii HOM05D001970 ORTHO05D004069 3.1e-19 98.6 104 47.1
Duzib151G0565 Durio zibethinus HOM05D001970 ORTHO05D004069 4.1e-19 98.2 98 49.0
Gohir.A10G069000 Gossypium hirsutum HOM05D001970 ORTHO05D004069 4.1e-19 98.2 98 50.0
Gohir.D10G082400 Gossypium hirsutum HOM05D001970 ORTHO05D004069 4.1e-19 98.2 98 50.0
Gorai.011G089300 Gossypium raimondii HOM05D001970 ORTHO05D004069 4.1e-19 98.2 98 50.0
Hma1.2p1_2065F.1_g313010 Hydrangea macrophylla HOM05D001970 ORTHO05D004069 4.1e-19 98.2 98 49.0
Manes.04G118100 Manihot esculenta HOM05D001970 ORTHO05D004069 7.0e-19 97.4 98 50.0
SGA_v2.0_scaffold227G43218 Striga asiatica HOM05D001970 ORTHO05D004069 7.0e-19 97.4 107 46.7
GSVIVG01034936001 Vitis vinifera HOM05D001970 ORTHO05D004069 7.0e-19 97.4 98 46.9
Cfa015694 Carpinus fangiana HOM05D001970 ORTHO05D004069 9.2e-19 97.1 98 51.0
Ca_09315_v3 Cicer arietinum L. HOM05D001970 ORTHO05D004069 9.2e-19 97.1 103 46.6
GSVIVG01034915001 Vitis vinifera HOM05D001970 ORTHO05D004069 9.2e-19 97.1 98 46.9
Potri.010G037200 Populus trichocarpa HOM05D001970 ORTHO05D004069 1.2e-18 96.7 98 49.0
Potri.010G151000 Populus trichocarpa HOM05D001970 ORTHO05D004069 1.2e-18 96.7 99 48.5
Sed0005247 Sechium edule HOM05D001970 ORTHO05D004069 1.2e-18 96.7 98 51.0
ClCG05G006690 Citrullus lanatus HOM05D001970 ORTHO05D004069 1.6e-18 96.3 99 48.5
Lalb_Chr07g0181871 Lupinus albus HOM05D001970 ORTHO05D004069 1.6e-18 96.3 98 46.9
Thecc.04G307800 Theobroma cacao HOM05D001970 ORTHO05D004069 1.6e-18 96.3 98 51.0
Thecc.05G289900 Theobroma cacao HOM05D001970 ORTHO05D004069 1.6e-18 96.3 98 50.0
Glyma.06G083900 Glycine max HOM05D001970 ORTHO05D004069 2.0e-18 95.9 98 48.0
Cpa.g.sc146.67 Carica papaya HOM05D001970 ORTHO05D004069 2.7e-18 95.5 98 48.0
Haze_00827 Corylus avellana HOM05D001970 ORTHO05D004069 2.7e-18 95.5 98 51.0
Psat4g019000 Pisum sativum HOM05D001970 ORTHO05D004069 3.5e-18 95.1 103 46.6
PGSC0003DMG400027205 Solanum tuberosum HOM05D001970 ORTHO05D004069 3.5e-18 95.1 98 48.0
unitig_26.g10618 Utricularia gibba HOM05D001970 ORTHO05D004069 3.5e-18 95.1 98 48.0
HPP92_015244 Vanilla planifolia HOM05D001970 ORTHO05D004069 3.5e-18 95.1 97 48.5
VMungo1309G1592 Vigna mungo HOM05D001970 ORTHO05D004069 3.5e-18 95.1 98 49.0
Actinidia18483 Actinidia chinensis HOM05D001970 ORTHO05D004069 4.5e-18 94.7 98 48.0
Actinidia31583 Actinidia chinensis HOM05D001970 ORTHO05D004069 4.5e-18 94.7 103 47.6
MSTRG.21751 Avicennia marina HOM05D001970 ORTHO05D004069 4.5e-18 94.7 97 47.4
MBI19_g32692_MAGBIO Magnolia biondii HOM05D003039 ORTHO05D009478 4.5e-18 94.7 98 49.0
Dinv44243 Davidia involucrata HOM05D001970 ORTHO05D004069 5.9e-18 94.4 98 49.0
Lj4g0011707 Lotus japonicus HOM05D001970 ORTHO05D004069 5.9e-18 94.4 97 47.4
TPR.G12625 Trifolium pratense HOM05D001970 ORTHO05D004069 7.8e-18 94.0 103 45.6
TAR362G0012 Trochodendron aralioides HOM05D001970 ORTHO05D004069 7.8e-18 94.0 98 44.9
Sc19g0000220 Simmondsia chinensis HOM05D001970 ORTHO05D004069 1.0e-17 93.6 98 48.0
Sopen05g031820 Solanum pennellii HOM05D001970 ORTHO05D004069 1.0e-17 93.6 98 45.9
AL3G30240 Arabidopsis lyrata HOM05D001970 ORTHO05D004069 1.3e-17 93.2 105 46.7
arahy.Tifrunner.gnm1.ann1.KB2WLH Arachis hypogaea HOM05D001970 ORTHO05D004069 1.3e-17 93.2 98 44.9
Nitab4.5_0008312g0070 Nicotiana tabacum HOM05D001970 ORTHO05D004069 1.3e-17 93.2 98 46.9
Solyc05g053310.3 Solanum lycopersicum HOM05D001970 ORTHO05D004069 1.3e-17 93.2 98 44.9
MELO3C006735.2 Cucumis melo HOM05D001970 ORTHO05D004069 1.7e-17 92.8 98 48.0
Medtr4g124920 Medicago truncatula HOM05D001970 ORTHO05D004069 1.7e-17 92.8 97 46.4
Potri.010G150900 Populus trichocarpa HOM05D001970 ORTHO05D004069 1.7e-17 92.8 103 45.6
Prupe.1G111200 Prunus persica HOM05D001970 ORTHO05D004069 1.7e-17 92.8 98 48.0
CAN.G305.52 Capsicum annuum HOM05D001970 ORTHO05D004069 2.3e-17 92.4 98 46.9
ClCG05G006740 Citrullus lanatus HOM05D001970 ORTHO05D004069 2.3e-17 92.4 98 48.0
Nitab4.5_0000745g0210 Nicotiana tabacum HOM05D001970 ORTHO05D004069 2.9e-17 92.0 104 44.2
PGR031G1418 Punica granatum HOM05D001970 ORTHO05D004069 2.9e-17 92.0 98 44.9
QL06p013371 Quercus lobata HOM05D001970 ORTHO05D004069 2.9e-17 92.0 98 45.9
Hund21091 Selenicereus undatus HOM05D001970 ORTHO05D004069 2.9e-17 92.0 98 46.9
Aa31LG8G4180 Aethionema arabicum HOM05D000747 ORTHO05D004807 3.8e-17 91.7 97 47.4
BcaC09g48682 Brassica carinata HOM05D001970 ORTHO05D004069 3.8e-17 91.7 97 47.4
C01p46960 Brassica napus HOM05D001970 ORTHO05D004069 3.8e-17 91.7 97 47.4
C01p46990 Brassica napus HOM05D001970 ORTHO05D004069 3.8e-17 91.7 97 47.4
BolC1t04667H Brassica oleracea HOM05D001970 ORTHO05D004069 3.8e-17 91.7 97 47.4
CsaV3_3G015370 Cucumis sativus L. HOM05D001970 ORTHO05D004069 3.8e-17 91.7 98 46.9
Psat5g255320 Pisum sativum HOM05D001970 ORTHO05D004069 3.8e-17 91.7 103 44.7
Sp3g15420 Schrenkiella parvula HOM05D001970 ORTHO05D004069 3.8e-17 91.7 97 47.4
SGA_v2.0_scaffold19G08903 Striga asiatica HOM05D001970 ORTHO05D004069 3.8e-17 91.7 97 46.4
THA.LOC104820283 Tarenaya hassleriana HOM05D001970 ORTHO05D004069 3.8e-17 91.7 97 47.4
Atru.chr4.3101 Acer truncatum HOM05D001970 ORTHO05D004069 5.0e-17 91.3 98 48.0
Ciclev10006242m.g Citrus clementina HOM05D001970 ORTHO05D004069 5.0e-17 91.3 98 46.9
MD13G1147600 Malus domestica HOM05D001970 ORTHO05D004069 5.0e-17 91.3 98 48.0
Atru.chr4.3100 Acer truncatum HOM05D001970 ORTHO05D004069 6.6e-17 90.9 98 46.9
AT3G17210 Arabidopsis thaliana HOM05D001970 ORTHO05D004069 6.6e-17 90.9 97 49.5
BcaB04g20854 Brassica carinata HOM05D001970 ORTHO05D004069 6.6e-17 90.9 97 47.4
Sed0006681 Sechium edule HOM05D001970 ORTHO05D004069 6.6e-17 90.9 98 48.0
C01p47010 Brassica napus HOM05D001970 ORTHO05D004069 8.6e-17 90.5 97 46.4
BolC1t04669H Brassica oleracea HOM05D001970 ORTHO05D004069 8.6e-17 90.5 97 46.4
SalBow5G5314 Salvia bowleyana HOM05D001970 ORTHO05D004069 8.6e-17 90.5 97 42.3
BcaC09g48679 Brassica carinata HOM05D001970 ORTHO05D004069 1.1e-16 90.1 97 46.4
A01p37110 Brassica napus HOM05D001970 ORTHO05D004069 1.1e-16 90.1 97 46.4
Carub.0003s1697 Capsella rubella HOM05D001970 ORTHO05D004069 1.1e-16 90.1 97 48.5
Sabra10G0116200 Salix brachista HOM05D001970 ORTHO05D004069 1.1e-16 90.1 102 45.1
BraA01t03770Z Brassica rapa HOM05D001970 ORTHO05D004069 1.5e-16 89.7 97 46.4
COL.COLO4_34553 Corchorus olitorius HOM05D001970 ORTHO05D004069 1.5e-16 89.7 98 46.9
TWI73G0733 Tripterygium wilfordii HOM05D001970 ORTHO05D004069 1.5e-16 89.7 98 43.9
CARHR092480 Cardamine hirsuta HOM05D001970 ORTHO05D004069 1.9e-16 89.4 97 45.4
ClCG01G008350 Citrullus lanatus HOM05D001970 ORTHO05D004069 1.9e-16 89.4 99 46.5
Cc03_g00440 Coffea canephora HOM05D001970 ORTHO05D004069 1.9e-16 89.4 97 45.4
Ah.04g157230 Amaranthus hybridus HOM05D001970 ORTHO05D004069 2.5e-16 89.0 98 45.9
Lsat_1_v5_gn_4_46140 Lactuca sativa HOM05D001970 ORTHO05D004069 2.5e-16 89.0 97 44.3
CiPaw.02G071900 Carya illinoinensis HOM05D001970 ORTHO05D004069 3.3e-16 88.6 98 45.9
AUR62005911 Chenopodium quinoa HOM05D001970 ORTHO05D004069 3.3e-16 88.6 100 46.0
Peaxi162Scf00164g00522 Petunia axillaris HOM05D001970 ORTHO05D004069 3.3e-16 88.6 96 43.8
Potri.010G150700 Populus trichocarpa HOM05D001970 ORTHO05D004069 3.3e-16 88.6 101 43.6
CANSAT78G2049 Cannabis sativa HOM05D001970 ORTHO05D004069 4.3e-16 88.2 98 44.9
arahy.Tifrunner.gnm1.ann1.WPV56H Arachis hypogaea HOM05D001970 ORTHO05D004069 7.3e-16 87.4 98 42.9
EL10Ac3g05094 Beta vulgaris HOM05D001970 ORTHO05D004069 7.3e-16 87.4 102 43.1
Peaxi162Scf00164g00521 Petunia axillaris HOM05D001970 ORTHO05D004069 7.3e-16 87.4 98 43.9
HanXRQChr16g0519591 Helianthus annuus HOM05D001970 ORTHO05D004069 9.5e-16 87.0 97 45.4
Lalb_Chr13g0298751 Lupinus albus HOM05D001970 ORTHO05D004069 9.5e-16 87.0 98 43.9
CSS0044499 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 1.2e-15 86.7 103 40.8
Cfa015695 Carpinus fangiana HOM05D001970 ORTHO05D004069 1.2e-15 86.7 98 44.9
ECA234G1379 Erigeron canadensis HOM05D001970 ORTHO05D004069 1.2e-15 86.7 97 46.4
Migut.N00022 Erythranthe guttata HOM05D001970 ORTHO05D004069 1.6e-15 86.3 97 41.2
AUR62028155 Chenopodium quinoa HOM05D001970 ORTHO05D004069 2.8e-15 85.5 98 44.9
Migut.N00023 Erythranthe guttata HOM05D001970 ORTHO05D004069 2.8e-15 85.5 94 44.7
Phvul.009G108100 Phaseolus vulgaris HOM05D001970 ORTHO05D004069 3.6e-15 85.1 104 44.2
SEGI_08307 Sequoiadendron giganteum HOM05D001970 ORTHO05D004069 3.6e-15 85.1 98 42.9
SMO147G0378 Selaginella moellendorffii HOM05D001970 ORTHO05D004069 4.7e-15 84.7 106 42.5
QL04p008488 Quercus lobata HOM05D001970 ORTHO05D004069 6.1e-15 84.3 98 42.9
VMungo1309G0293 Vigna mungo HOM05D001970 ORTHO05D004069 6.1e-15 84.3 120 40.0
Peaxi162Scf00164g00613 Petunia axillaris HOM05D001970 ORTHO05D004069 8.0e-15 84.0 96 41.7
RcHm_v2.0_Chr4g0426271 Rosa chinensis HOM05D001970 ORTHO05D004069 1.0e-14 83.6 98 42.9
SalBow5G1240 Salvia bowleyana HOM05D001970 ORTHO05D004069 1.0e-14 83.6 102 36.3
VMungo1309G3098 Vigna mungo HOM05D001970 ORTHO05D004069 1.4e-14 83.2 104 42.3
Peaxi162Scf00164g00711 Petunia axillaris HOM05D001970 ORTHO05D004069 2.3e-14 82.4 95 41.1
Peaxi162Scf00164g00612 Petunia axillaris HOM05D001970 ORTHO05D004069 3.0e-14 82.0 95 40.0
Pp3c21_18250 Physcomitrium patens HOM05D001970 ORTHO05D004069 3.0e-14 82.0 98 42.9
RcHm_v2.0_Chr1g0339351 Rosa chinensis HOM05D001970 ORTHO05D004069 3.0e-14 82.0 98 42.9
HPP92_015245 Vanilla planifolia HOM05D001970 ORTHO05D004069 4.0e-14 81.6 97 41.2
FvH4_4g20800 Fragaria vesca HOM05D001970 ORTHO05D004069 5.2e-14 81.3 98 39.8
SalBow2G0974 Salvia bowleyana HOM05D001970 ORTHO05D004069 8.9e-14 80.5 102 35.3
Thhalv10021839m.g Eutrema salsugineum HOM05D001970 ORTHO05D004069 1.2e-13 80.1 73 50.7
FAN07G1061 Fragaria x ananassa HOM05D001970 ORTHO05D004069 1.5e-13 79.7 97 40.2
Lj4g0017975 Lotus japonicus HOM05D001970 ORTHO05D004069 2.0e-13 79.3 98 41.8
SalBow2G2990 Salvia bowleyana HOM05D001970 ORTHO05D004069 2.0e-13 79.3 102 37.3
SEGI_17677 Sequoiadendron giganteum HOM05D001970 ORTHO05D004069 2.0e-13 79.3 98 40.8
Haze_03182 Corylus avellana HOM05D001970 ORTHO05D004069 3.4e-13 78.6 98 38.8
Peaxi162Scf00164g00614 Petunia axillaris HOM05D001970 ORTHO05D004069 3.4e-13 78.6 86 43.0
Prupe.1G111100 Prunus persica HOM05D001970 ORTHO05D004069 3.4e-13 78.6 99 44.4
Mapoly0058s0001 Marchantia polymorpha HOM05D001970 ORTHO05D004069 3.7e-12 75.1 97 39.2
SalBow2G3109 Salvia bowleyana HOM05D001970 ORTHO05D004069 3.7e-12 75.1 102 31.4
CANSAT78G1737 Cannabis sativa HOM05D001970 ORTHO05D004069 4.9e-12 74.7 103 36.9
MD16G1147300 Malus domestica HOM05D001970 ORTHO05D004069 4.9e-12 74.7 86 43.0
CiPaw.14G000900 Carya illinoinensis HOM05D001970 ORTHO05D004069 6.4e-12 74.3 101 36.6
MBI02_g25246_MAGBIO Magnolia biondii HOM05D001970 ORTHO05D004069 6.4e-12 74.3 98 40.8
MBI02_g25818_MAGBIO Magnolia biondii HOM05D001970 ORTHO05D004069 1.1e-11 73.6 100 40.0
MD16G1147500 Malus domestica HOM05D001970 ORTHO05D004069 1.9e-11 72.8 119 38.7
CSS0036297 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 2.4e-11 72.4 98 39.8
Eucgr.B02215 Eucalyptus grandis HOM05D001970 ORTHO05D004069 2.4e-11 72.4 98 38.8
Eucgr.B02219 Eucalyptus grandis HOM05D001970 ORTHO05D004069 2.4e-11 72.4 98 38.8
Eucgr.B02218 Eucalyptus grandis HOM05D001970 ORTHO05D004069 3.2e-11 72.0 98 37.8
CANSAT78G1946 Cannabis sativa HOM05D001970 ORTHO05D004069 5.4e-11 71.2 97 38.1
CANSAT78G2021 Cannabis sativa HOM05D001970 ORTHO05D004069 5.4e-11 71.2 97 38.1
PSO729G0118 Papaver somniferum HOM05D001970 ORTHO05D004069 9.2e-11 70.5 97 35.1
Eucgr.B02214 Eucalyptus grandis HOM05D001970 ORTHO05D004069 1.2e-10 70.1 98 39.8
SEGI_14059 Sequoiadendron giganteum HOM05D001970 ORTHO05D004069 7.8e-10 67.4 96 35.4
SEGI_19086 Sequoiadendron giganteum HOM05D001970 ORTHO05D004069 7.8e-10 67.4 96 35.4
SEGI_19672 Sequoiadendron giganteum HOM05D001970 ORTHO05D004069 1.0e-09 67.0 96 34.4
Eucgr.B02216 Eucalyptus grandis HOM05D001970 ORTHO05D004069 3.9e-09 65.1 98 36.7
THA.LOC104800551 Tarenaya hassleriana HOM05D001970 ORTHO05D006581 3.9e-09 65.1 96 34.4
Oeu052154.2 Olea europaea HOM05D001970 ORTHO05D004069 5.0e-09 64.7 166 27.1
PSO724G0194 Papaver somniferum HOM05D001970 ORTHO05D004069 5.0e-09 64.7 97 33.0
Eucgr.L02572 Eucalyptus grandis HOM05D001970 ORTHO05D004069 1.5e-08 63.2 97 34.0
CiPaw.13G006300 Carya illinoinensis HOM05D001970 ORTHO05D004069 1.9e-08 62.8 80 41.2
Eucgr.K03419 Eucalyptus grandis HOM05D001970 ORTHO05D004069 1.9e-08 62.8 97 34.0
AUR62005910 Chenopodium quinoa HOM05D001970 ORTHO05D004069 4.3e-08 61.6 160 28.8
GSVIVG01017635001 Vitis vinifera HOM05D001970 ORTHO05D004069 4.3e-08 61.6 63 44.4
GSVIVG01034937001 Vitis vinifera HOM05D001970 ORTHO05D004069 4.3e-08 61.6 63 44.4
BraA01t03767Z Brassica rapa HOM05D001970 ORTHO05D004069 2.8e-07 58.9 97 37.1
TAR633G0932 Trochodendron aralioides HOM05D001970 ORTHO05D006581 8.0e-07 57.4 96 34.4
A01p37060 Brassica napus HOM05D001970 ORTHO05D004069 1.8e-06 56.2 63 44.4
vmacro07978 Vaccinium macrocarpon HOM05D001970 ORTHO05D004069 3.1e-06 55.5 57 45.6


User provided reference genes

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