Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0116200 Salix brachista HOM05D001970 ORTHO05D004069 7.7e-61 236.9 114 100.0
Potri.010G150700 Populus trichocarpa HOM05D001970 ORTHO05D004069 1.1e-51 206.5 114 86.0
Sabra10G0116300 Salix brachista HOM05D001970 ORTHO05D004069 8.7e-20 100.5 102 43.1
Potri.010G150800 Populus trichocarpa HOM05D001970 ORTHO05D004069 1.9e-19 99.4 102 42.2
Potri.010G150500 Populus trichocarpa HOM05D001970 ORTHO05D004069 1.3e-18 96.7 104 44.2
Sabra10G0116100 Salix brachista HOM05D001970 ORTHO05D004069 8.1e-18 94.0 104 44.2
Manes.11G051025 Manihot esculenta HOM05D001970 ORTHO05D004069 1.1e-17 93.6 96 41.7
PGR031G3476 Punica granatum HOM05D001970 ORTHO05D004069 1.1e-17 93.6 96 43.8
Dinv44243 Davidia involucrata HOM05D001970 ORTHO05D004069 1.4e-17 93.2 96 42.7
Sed0005247 Sechium edule HOM05D001970 ORTHO05D004069 3.1e-17 92.0 96 44.8
AL3G30240 Arabidopsis lyrata HOM05D001970 ORTHO05D004069 4.0e-17 91.7 96 41.7
AT3G17210 Arabidopsis thaliana HOM05D001970 ORTHO05D004069 4.0e-17 91.7 95 43.2
Haze_00827 Corylus avellana HOM05D001970 ORTHO05D004069 4.0e-17 91.7 96 42.7
Duzib151G0565 Durio zibethinus HOM05D001970 ORTHO05D004069 4.0e-17 91.7 96 42.7
C01p46960 Brassica napus HOM05D001970 ORTHO05D004069 5.3e-17 91.3 95 41.1
Cfa015694 Carpinus fangiana HOM05D001970 ORTHO05D004069 5.3e-17 91.3 96 41.7
MELO3C006735.2 Cucumis melo HOM05D001970 ORTHO05D004069 5.3e-17 91.3 96 43.8
Nitab4.5_0008312g0070 Nicotiana tabacum HOM05D001970 ORTHO05D004069 5.3e-17 91.3 99 40.4
Eucgr.B02212 Eucalyptus grandis HOM05D001970 ORTHO05D004069 6.9e-17 90.9 96 41.7
Potri.010G037500 Populus trichocarpa HOM05D001970 ORTHO05D004069 6.9e-17 90.9 96 40.6
Carub.0003s1697 Capsella rubella HOM05D001970 ORTHO05D004069 9.0e-17 90.5 95 42.1
QL06p013371 Quercus lobata HOM05D001970 ORTHO05D004069 9.0e-17 90.5 99 38.4
Sabra10G0115900 Salix brachista HOM05D001970 ORTHO05D004069 9.0e-17 90.5 110 40.0
CsaV3_3G015370 Cucumis sativus L. HOM05D001970 ORTHO05D004069 1.2e-16 90.1 96 42.7
Gohir.A10G069000 Gossypium hirsutum HOM05D001970 ORTHO05D004069 1.2e-16 90.1 96 42.7
Gohir.D10G082400 Gossypium hirsutum HOM05D001970 ORTHO05D004069 1.2e-16 90.1 96 42.7
Gorai.011G089300 Gossypium raimondii HOM05D001970 ORTHO05D004069 1.2e-16 90.1 96 42.7
Hma1.2p1_2065F.1_g313010 Hydrangea macrophylla HOM05D001970 ORTHO05D004069 1.2e-16 90.1 96 40.6
PGSC0003DMG400027205 Solanum tuberosum HOM05D001970 ORTHO05D004069 1.2e-16 90.1 96 40.6
ClCG05G006740 Citrullus lanatus HOM05D001970 ORTHO05D004069 1.5e-16 89.7 96 42.7
Peaxi162Scf00164g00521 Petunia axillaris HOM05D001970 ORTHO05D004069 1.5e-16 89.7 96 40.6
Nn3g21834 Nelumbo nucifera HOM05D001970 ORTHO05D004069 2.0e-16 89.4 96 40.6
Sabra10G0116400 Salix brachista HOM05D001970 ORTHO05D004069 2.0e-16 89.4 102 45.1
CSS0034239 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 2.6e-16 89.0 96 42.7
FvH4_4g20800 Fragaria vesca HOM05D001970 ORTHO05D004069 2.6e-16 89.0 96 38.5
Sed0006681 Sechium edule HOM05D001970 ORTHO05D004069 2.6e-16 89.0 96 43.8
TAR362G0012 Trochodendron aralioides HOM05D001970 ORTHO05D004069 2.6e-16 89.0 96 39.6
BcaC09g48682 Brassica carinata HOM05D001970 ORTHO05D004069 3.4e-16 88.6 95 40.0
C01p46990 Brassica napus HOM05D001970 ORTHO05D004069 3.4e-16 88.6 95 40.0
BolC1t04667H Brassica oleracea HOM05D001970 ORTHO05D004069 3.4e-16 88.6 95 40.0
Ciclev10006242m.g Citrus clementina HOM05D001970 ORTHO05D004069 3.4e-16 88.6 96 39.6
Glyma.04G082200 Glycine max HOM05D001970 ORTHO05D004069 3.4e-16 88.6 96 40.6
Solyc05g053310.3 Solanum lycopersicum HOM05D001970 ORTHO05D004069 3.4e-16 88.6 96 38.5
Sopen05g031820 Solanum pennellii HOM05D001970 ORTHO05D004069 3.4e-16 88.6 96 38.5
BcaB04g20854 Brassica carinata HOM05D001970 ORTHO05D004069 4.5e-16 88.2 95 40.0
Nitab4.5_0000745g0210 Nicotiana tabacum HOM05D001970 ORTHO05D004069 4.5e-16 88.2 99 38.4
PGR031G1418 Punica granatum HOM05D001970 ORTHO05D004069 4.5e-16 88.2 96 40.6
RcHm_v2.0_Chr4g0426271 Rosa chinensis HOM05D001970 ORTHO05D004069 4.5e-16 88.2 96 39.6
Potri.010G037200 Populus trichocarpa HOM05D001970 ORTHO05D004069 5.8e-16 87.8 96 39.6
A01p37110 Brassica napus HOM05D001970 ORTHO05D004069 7.6e-16 87.4 95 38.9
CiPaw.01G133200 Carya illinoinensis HOM05D001970 ORTHO05D004069 7.6e-16 87.4 96 39.6
C01p47010 Brassica napus HOM05D001970 ORTHO05D004069 9.9e-16 87.0 95 38.9
BolC1t04669H Brassica oleracea HOM05D001970 ORTHO05D004069 9.9e-16 87.0 95 38.9
BraA01t03770Z Brassica rapa HOM05D001970 ORTHO05D004069 9.9e-16 87.0 95 38.9
CiPaw.02G071900 Carya illinoinensis HOM05D001970 ORTHO05D004069 9.9e-16 87.0 96 39.6
FAN07G1061 Fragaria x ananassa HOM05D001970 ORTHO05D004069 9.9e-16 87.0 95 37.9
Lsat_1_v5_gn_4_46140 Lactuca sativa HOM05D001970 ORTHO05D004069 9.9e-16 87.0 95 41.1
Manes.04G118100 Manihot esculenta HOM05D001970 ORTHO05D004069 9.9e-16 87.0 96 42.7
HPP92_015244 Vanilla planifolia HOM05D001970 ORTHO05D004069 9.9e-16 87.0 95 40.0
Cpa.g.sc146.67 Carica papaya HOM05D001970 ORTHO05D004069 1.3e-15 86.7 96 39.6
Sabra10G0028300 Salix brachista HOM05D001970 ORTHO05D004069 1.3e-15 86.7 96 39.6
Thecc.04G307800 Theobroma cacao HOM05D001970 ORTHO05D004069 1.3e-15 86.7 96 40.6
Cfa015695 Carpinus fangiana HOM05D001970 ORTHO05D004069 1.7e-15 86.3 96 39.6
GSVIVG01034936001 Vitis vinifera HOM05D001970 ORTHO05D004069 1.7e-15 86.3 96 38.5
Zm00001eb357750 Zea mays HOM05D001970 ORTHO05D004069 1.7e-15 86.3 106 34.9
BcaC09g48679 Brassica carinata HOM05D001970 ORTHO05D004069 2.2e-15 85.9 95 38.9
Rhsim04G0243300 Rhododendron simsii HOM05D001970 ORTHO05D004069 2.2e-15 85.9 96 39.6
TWI73G0733 Tripterygium wilfordii HOM05D001970 ORTHO05D004069 2.2e-15 85.9 96 38.5
Aqoxy5G02736 Aquilegia oxysepala HOM05D001970 ORTHO05D004069 2.9e-15 85.5 96 40.6
Phvul.009G108000 Phaseolus vulgaris HOM05D001970 ORTHO05D004069 2.9e-15 85.5 96 40.6
MD13G1147600 Malus domestica HOM05D001970 ORTHO05D004069 3.8e-15 85.1 96 38.5
Thecc.05G289900 Theobroma cacao HOM05D001970 ORTHO05D004069 3.8e-15 85.1 96 39.6
GSVIVG01034915001 Vitis vinifera HOM05D001970 ORTHO05D004069 3.8e-15 85.1 96 37.5
Aa31LG8G4180 Aethionema arabicum HOM05D000747 ORTHO05D004807 4.9e-15 84.7 95 38.9
Ah.04g157230 Amaranthus hybridus HOM05D001970 ORTHO05D004069 4.9e-15 84.7 96 38.5
CARHR092480 Cardamine hirsuta HOM05D001970 ORTHO05D004069 4.9e-15 84.7 95 36.8
Glyma.06G083900 Glycine max HOM05D001970 ORTHO05D004069 4.9e-15 84.7 96 39.6
RcHm_v2.0_Chr1g0339351 Rosa chinensis HOM05D001970 ORTHO05D004069 4.9e-15 84.7 96 37.5
CAN.G305.52 Capsicum annuum HOM05D001970 ORTHO05D004069 6.4e-15 84.3 96 38.5
MBI19_g32692_MAGBIO Magnolia biondii HOM05D003039 ORTHO05D009478 6.4e-15 84.3 96 39.6
ECA234G1379 Erigeron canadensis HOM05D001970 ORTHO05D004069 8.4e-15 84.0 95 38.9
Migut.N00021 Erythranthe guttata HOM05D001970 ORTHO05D004069 8.4e-15 84.0 95 36.8
CSS0044499 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 1.1e-14 83.6 96 38.5
Prupe.1G111200 Prunus persica HOM05D001970 ORTHO05D004069 1.1e-14 83.6 96 38.5
Peaxi162Scf00164g00522 Petunia axillaris HOM05D001970 ORTHO05D004069 1.4e-14 83.2 94 40.4
Potri.010G150900 Populus trichocarpa HOM05D001970 ORTHO05D004069 1.4e-14 83.2 96 39.6
arahy.Tifrunner.gnm1.ann1.KB2WLH Arachis hypogaea HOM05D001970 ORTHO05D004069 1.9e-14 82.8 96 38.5
Os01g0516600 Oryza sativa ssp. japonica HOM05D001970 ORTHO05D004069 1.9e-14 82.8 96 33.3
SGA_v2.0_scaffold19G08903 Striga asiatica HOM05D001970 ORTHO05D004069 1.9e-14 82.8 95 38.9
THA.LOC104820283 Tarenaya hassleriana HOM05D001970 ORTHO05D004069 1.9e-14 82.8 95 36.8
Atru.chr4.3100 Acer truncatum HOM05D001970 ORTHO05D004069 2.4e-14 82.4 96 38.5
Hund21091 Selenicereus undatus HOM05D001970 ORTHO05D004069 2.4e-14 82.4 96 39.6
Sc19g0000220 Simmondsia chinensis HOM05D001970 ORTHO05D004069 2.4e-14 82.4 96 38.5
VMungo1309G1592 Vigna mungo HOM05D001970 ORTHO05D004069 2.4e-14 82.4 96 39.6
AUR62005911 Chenopodium quinoa HOM05D001970 ORTHO05D004069 3.2e-14 82.0 98 40.8
Lalb_Chr13g0298751 Lupinus albus HOM05D001970 ORTHO05D004069 3.2e-14 82.0 96 39.6
Manes.03G208900 Manihot esculenta HOM05D001970 ORTHO05D004069 3.2e-14 82.0 96 38.5
Peaxi162Scf00164g00613 Petunia axillaris HOM05D001970 ORTHO05D004069 3.2e-14 82.0 94 39.4
QL04p008488 Quercus lobata HOM05D001970 ORTHO05D004069 3.2e-14 82.0 96 39.6
SalBow5G5314 Salvia bowleyana HOM05D001970 ORTHO05D004069 3.2e-14 82.0 95 33.7
CANSAT78G2049 Cannabis sativa HOM05D001970 ORTHO05D004069 4.2e-14 81.6 96 37.5
AUR62028155 Chenopodium quinoa HOM05D001970 ORTHO05D004069 4.2e-14 81.6 96 39.6
ClCG05G006690 Citrullus lanatus HOM05D001970 ORTHO05D004069 4.2e-14 81.6 96 37.5
Sp3g15420 Schrenkiella parvula HOM05D001970 ORTHO05D004069 5.4e-14 81.3 95 35.8
CiPaw.14G000900 Carya illinoinensis HOM05D001970 ORTHO05D004069 7.1e-14 80.9 101 38.6
Ca_09315_v3 Cicer arietinum L. HOM05D001970 ORTHO05D004069 9.3e-14 80.5 97 37.1
Cc03_g00440 Coffea canephora HOM05D001970 ORTHO05D004069 9.3e-14 80.5 95 34.7
COL.COLO4_34553 Corchorus olitorius HOM05D001970 ORTHO05D004069 9.3e-14 80.5 96 37.5
Lalb_Chr07g0181871 Lupinus albus HOM05D001970 ORTHO05D004069 9.3e-14 80.5 96 37.5
Medtr4g124920 Medicago truncatula HOM05D001970 ORTHO05D004069 9.3e-14 80.5 95 38.9
Peaxi162Scf00164g00711 Petunia axillaris HOM05D001970 ORTHO05D004069 9.3e-14 80.5 93 38.7
Potri.010G151200 Populus trichocarpa HOM05D001970 ORTHO05D004069 9.3e-14 80.5 102 37.3
Peaxi162Scf00164g00612 Petunia axillaris HOM05D001970 ORTHO05D004069 1.2e-13 80.1 93 37.6
ATR0693G141 Amborella trichopoda HOM05D001970 ORTHO05D004069 1.6e-13 79.7 96 36.5
TPR.G12625 Trifolium pratense HOM05D001970 ORTHO05D004069 1.6e-13 79.7 96 37.5
Actinidia31583 Actinidia chinensis HOM05D001970 ORTHO05D004069 2.1e-13 79.3 96 38.5
SalBow5G1240 Salvia bowleyana HOM05D001970 ORTHO05D004069 2.1e-13 79.3 95 34.7
SEGI_08307 Sequoiadendron giganteum HOM05D001970 ORTHO05D004069 2.7e-13 79.0 96 39.6
Lj4g0011707 Lotus japonicus HOM05D001970 ORTHO05D004069 3.5e-13 78.6 95 36.8
Atru.chr4.3101 Acer truncatum HOM05D001970 ORTHO05D004069 4.6e-13 78.2 96 36.5
Actinidia18483 Actinidia chinensis HOM05D001970 ORTHO05D004069 4.6e-13 78.2 99 36.4
MSTRG.21751 Avicennia marina HOM05D001970 ORTHO05D004069 4.6e-13 78.2 99 35.4
HanXRQChr16g0519591 Helianthus annuus HOM05D001970 ORTHO05D004069 4.6e-13 78.2 95 36.8
unitig_26.g10618 Utricularia gibba HOM05D001970 ORTHO05D004069 4.6e-13 78.2 99 36.4
arahy.Tifrunner.gnm1.ann1.WPV56H Arachis hypogaea HOM05D001970 ORTHO05D004069 1.0e-12 77.0 96 36.5
Haze_03182 Corylus avellana HOM05D001970 ORTHO05D004069 1.0e-12 77.0 96 36.5
Psat4g019000 Pisum sativum HOM05D001970 ORTHO05D004069 1.3e-12 76.6 96 35.4
Potri.010G151000 Populus trichocarpa HOM05D001970 ORTHO05D004069 1.3e-12 76.6 99 36.4
SalBow2G3109 Salvia bowleyana HOM05D001970 ORTHO05D004069 1.3e-12 76.6 95 33.7
HPP92_015245 Vanilla planifolia HOM05D001970 ORTHO05D004069 2.3e-12 75.9 95 35.8
EL10Ac3g05094 Beta vulgaris HOM05D001970 ORTHO05D004069 3.0e-12 75.5 96 34.4
Peaxi162Scf00164g00614 Petunia axillaris HOM05D001970 ORTHO05D004069 3.0e-12 75.5 84 40.5
Psat5g255320 Pisum sativum HOM05D001970 ORTHO05D004069 3.0e-12 75.5 96 35.4
Eucgr.B02215 Eucalyptus grandis HOM05D001970 ORTHO05D004069 3.9e-12 75.1 96 33.3
VMungo1309G0293 Vigna mungo HOM05D001970 ORTHO05D004069 6.7e-12 74.3 118 33.1
Thhalv10021839m.g Eutrema salsugineum HOM05D001970 ORTHO05D004069 1.5e-11 73.2 79 38.0
ClCG01G008350 Citrullus lanatus HOM05D001970 ORTHO05D004069 1.9e-11 72.8 96 36.5
SGA_v2.0_scaffold227G43218 Striga asiatica HOM05D001970 ORTHO05D004069 1.9e-11 72.8 96 34.4
SEGI_17677 Sequoiadendron giganteum HOM05D001970 ORTHO05D004069 2.5e-11 72.4 96 36.5
Migut.N00022 Erythranthe guttata HOM05D001970 ORTHO05D004069 3.3e-11 72.0 95 31.6
Eucgr.B02218 Eucalyptus grandis HOM05D001970 ORTHO05D004069 4.3e-11 71.6 94 34.0
SMO147G0378 Selaginella moellendorffii HOM05D001970 ORTHO05D004069 4.3e-11 71.6 96 35.4
SalBow2G2990 Salvia bowleyana HOM05D001970 ORTHO05D004069 5.6e-11 71.2 95 33.7
MD16G1147300 Malus domestica HOM05D001970 ORTHO05D004069 7.4e-11 70.9 78 39.7
Prupe.1G111100 Prunus persica HOM05D001970 ORTHO05D004069 9.6e-11 70.5 85 35.3
MBI02_g25818_MAGBIO Magnolia biondii HOM05D001970 ORTHO05D004069 2.1e-10 69.3 96 32.3
Migut.N00023 Erythranthe guttata HOM05D001970 ORTHO05D004069 2.8e-10 68.9 92 32.6
Eucgr.B02219 Eucalyptus grandis HOM05D001970 ORTHO05D004069 2.8e-10 68.9 96 32.3
MD16G1147500 Malus domestica HOM05D001970 ORTHO05D004069 2.8e-10 68.9 117 31.6
MBI02_g25246_MAGBIO Magnolia biondii HOM05D001970 ORTHO05D004069 3.6e-10 68.6 99 33.3
Eucgr.K03418 Eucalyptus grandis HOM05D001970 ORTHO05D004069 8.1e-10 67.4 95 28.4
Lj4g0017975 Lotus japonicus HOM05D001970 ORTHO05D004069 1.1e-09 67.0 96 35.4
Eucgr.L02572 Eucalyptus grandis HOM05D001970 ORTHO05D004069 1.8e-09 66.2 95 28.4
Eucgr.K03419 Eucalyptus grandis HOM05D001970 ORTHO05D004069 4.0e-09 65.1 95 28.4
PSO724G0194 Papaver somniferum HOM05D001970 ORTHO05D004069 4.0e-09 65.1 110 29.1
PSO729G0118 Papaver somniferum HOM05D001970 ORTHO05D004069 5.3e-09 64.7 95 30.5
SalBow2G0974 Salvia bowleyana HOM05D001970 ORTHO05D004069 9.0e-09 63.9 95 27.4
Eucgr.B03989 Eucalyptus grandis HOM05D001970 ORTHO05D004069 1.2e-08 63.5 95 29.5
Eucgr.L02763 Eucalyptus grandis HOM05D001970 ORTHO05D004069 1.2e-08 63.5 95 28.4
CANSAT78G1946 Cannabis sativa HOM05D001970 ORTHO05D004069 2.0e-08 62.8 95 29.5
CANSAT78G2021 Cannabis sativa HOM05D001970 ORTHO05D004069 2.0e-08 62.8 95 29.5
Mapoly0058s0001 Marchantia polymorpha HOM05D001970 ORTHO05D004069 2.0e-08 62.8 97 29.9
Pp3c21_18250 Physcomitrium patens HOM05D001970 ORTHO05D004069 2.0e-08 62.8 96 31.2
CSS0036297 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 2.6e-08 62.4 96 35.4
Eucgr.B02216 Eucalyptus grandis HOM05D001970 ORTHO05D004069 3.4e-08 62.0 86 33.7
Eucgr.B02214 Eucalyptus grandis HOM05D001970 ORTHO05D004069 4.5e-08 61.6 96 34.4
CANSAT78G1737 Cannabis sativa HOM05D001970 ORTHO05D004069 4.9e-07 58.2 105 30.5
Eucgr.K03413 Eucalyptus grandis HOM05D001970 ORTHO05D004069 4.9e-07 58.2 95 26.3
Eucgr.K03416 Eucalyptus grandis HOM05D001970 ORTHO05D004069 8.4e-07 57.4 95 29.5
BraA01t03767Z Brassica rapa HOM05D001970 ORTHO05D004069 1.4e-06 56.6 95 30.5
CiPaw.13G006300 Carya illinoinensis HOM05D001970 ORTHO05D004069 5.5e-06 54.7 78 34.6


User provided reference genes

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