Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 1.6e-50 202.6 112 100.0
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.0e-49 199.9 112 97.3
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 3.1e-46 188.3 110 91.8
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 4.5e-45 184.5 110 90.9
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 4.5e-45 184.5 112 92.0
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 4.5e-45 184.5 112 92.0
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 5.9e-45 184.1 112 91.1
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 7.6e-45 183.7 112 92.0
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 1.0e-44 183.3 112 92.0
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 2.2e-44 182.2 110 93.6
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 6.5e-44 180.6 111 90.1
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 8.5e-44 180.3 112 89.3
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 8.5e-44 180.3 112 90.2
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 8.5e-44 180.3 112 89.3
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 1.1e-43 179.9 110 89.1
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 1.1e-43 179.9 112 91.1
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.4e-43 179.5 110 90.0
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.5e-43 178.7 112 89.3
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.5e-43 178.7 112 89.3
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.5e-43 178.7 112 89.3
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 2.5e-43 178.7 110 88.2
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 3.2e-43 178.3 110 90.0
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 4.2e-43 177.9 110 91.8
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 5.5e-43 177.6 110 90.9
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 7.2e-43 177.2 112 89.3
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 9.3e-43 176.8 110 89.1
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 9.3e-43 176.8 110 89.1
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 9.3e-43 176.8 110 89.1
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 9.3e-43 176.8 110 90.0
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 1.2e-42 176.4 112 87.5
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 1.2e-42 176.4 112 88.4
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 1.2e-42 176.4 111 88.3
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 1.2e-42 176.4 108 88.9
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 1.6e-42 176.0 112 89.3
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.6e-42 176.0 110 87.3
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.6e-42 176.0 110 87.3
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 1.6e-42 176.0 110 90.0
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 2.1e-42 175.6 113 85.0
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.1e-42 175.6 112 88.4
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 2.1e-42 175.6 112 88.4
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 2.1e-42 175.6 110 88.2
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 2.1e-42 175.6 110 90.0
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 2.1e-42 175.6 110 88.2
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 2.1e-42 175.6 110 88.2
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 2.7e-42 175.3 110 88.2
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 2.7e-42 175.3 110 89.1
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 4.6e-42 174.5 110 89.1
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 6.1e-42 174.1 110 87.3
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 6.1e-42 174.1 110 88.2
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 6.1e-42 174.1 112 84.8
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 6.1e-42 174.1 110 88.2
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 7.9e-42 173.7 112 88.4
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 7.9e-42 173.7 112 86.6
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 7.9e-42 173.7 110 89.1
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.3e-41 172.9 112 87.5
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 1.3e-41 172.9 110 86.4
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.3e-41 172.9 110 88.2
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.8e-41 172.6 112 87.5
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 2.3e-41 172.2 110 87.3
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 3.0e-41 171.8 110 84.5
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 3.0e-41 171.8 112 86.6
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 3.0e-41 171.8 110 88.2
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 3.9e-41 171.4 110 85.5
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 3.9e-41 171.4 112 85.7
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 6.7e-41 170.6 112 84.8
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 6.7e-41 170.6 132 76.5
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 3.3e-40 168.3 105 89.5
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 4.3e-40 167.9 112 82.1
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 5.7e-40 167.5 112 82.1
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 7.4e-40 167.2 112 82.1
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 7.4e-40 167.2 112 82.1
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 7.4e-40 167.2 112 82.1
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 7.4e-40 167.2 112 84.8
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 1.3e-39 166.4 110 85.5
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 1.3e-39 166.4 110 85.5
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 1.3e-39 166.4 110 85.5
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 2.2e-39 165.6 112 83.0
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 2.8e-39 165.2 126 77.8
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 4.8e-39 164.5 108 84.3
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 4.8e-39 164.5 110 82.7
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 6.3e-39 164.1 111 84.7
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 6.3e-39 164.1 111 84.7
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 6.3e-39 164.1 110 85.5
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 8.2e-39 163.7 112 83.0
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 8.2e-39 163.7 112 83.0
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 2.4e-38 162.2 110 80.9
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 3.1e-38 161.8 110 80.0
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 4.1e-38 161.4 110 84.5
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 2.0e-37 159.1 110 78.2
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 2.6e-37 158.7 110 79.1
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 2.6e-37 158.7 106 81.1
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 3.4e-37 158.3 110 79.1
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 3.4e-37 158.3 110 78.2
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 3.4e-37 158.3 110 78.2
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 3.4e-37 158.3 110 78.2
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 3.4e-37 158.3 110 78.2
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 3.4e-37 158.3 110 77.3
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 3.4e-37 158.3 101 84.2
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 3.4e-37 158.3 110 79.1
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 7.7e-37 157.1 97 89.7
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 7.7e-37 157.1 111 79.3
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 7.7e-37 157.1 112 82.1
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 1.3e-36 156.4 110 77.3
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.3e-36 156.4 110 80.9
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 1.7e-36 156.0 110 77.3
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 5.0e-36 154.5 110 77.3
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 5.0e-36 154.5 98 85.7
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 6.5e-36 154.1 112 78.6
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 6.5e-36 154.1 112 80.4
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 1.1e-35 153.3 110 76.4
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.4e-35 152.9 100 86.0
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 4.2e-35 151.4 110 75.5
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 9.4e-35 150.2 106 79.2
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.2e-34 149.8 114 78.1
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.0e-33 146.7 97 82.5
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.8e-33 146.0 112 75.9
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 2.3e-33 145.6 112 75.0
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 2.3e-33 145.6 110 76.4
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 3.9e-33 144.8 112 75.9
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 1.1e-32 143.3 110 73.6
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 4.4e-32 141.4 110 75.5
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 4.4e-32 141.4 100 75.0
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 1.3e-31 139.8 111 73.9
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.2e-31 139.0 180 52.8
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 8.2e-31 137.1 110 72.7
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 6.9e-30 134.0 110 73.6
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.2e-29 133.3 100 73.0
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 5.9e-29 131.0 85 83.5
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.4e-27 126.3 110 70.9
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 2.5e-27 125.6 107 68.2
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 5.5e-27 124.4 84 85.7
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 1.6e-26 122.9 101 65.3
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 2.0e-24 115.9 110 61.8
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 8.2e-23 110.5 68 88.2
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.0e-17 93.6 63 87.3
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 1.5e-16 89.7 53 86.8
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 2.6e-16 89.0 59 81.4
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 2.8e-15 85.5 48 91.7
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.2e-13 80.1 62 71.0
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 4.5e-13 78.2 93 57.0
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 4.5e-13 78.2 62 71.0
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 1.0e-12 77.0 60 75.0
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 5.0e-12 74.7 52 78.8
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 5.0e-12 74.7 110 47.3
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 1.4e-06 56.6 102 40.2


User provided reference genes

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