Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0112200 Salix brachista HOM05D000260 ORTHO05D004405 1.8e-98 362.5 168 100.0
Potri.010G145400 Populus trichocarpa HOM05D000260 ORTHO05D004405 1.5e-89 332.8 168 91.7
CSS0035427 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 2.1e-54 216.1 169 62.1
Manes.15G004500 Manihot esculenta HOM05D000260 ORTHO05D004405 3.3e-52 208.8 177 62.7
QL06p012226 Quercus lobata HOM05D000260 ORTHO05D004405 6.9e-50 201.1 168 59.5
COL.COLO4_34618 Corchorus olitorius HOM05D000260 ORTHO05D004405 1.7e-48 196.4 175 57.1
Thecc.04G300300 Theobroma cacao HOM05D000260 ORTHO05D004405 6.5e-48 194.5 170 55.9
Rhsim04G0238600 Rhododendron simsii HOM05D000260 ORTHO05D004405 1.3e-40 170.2 171 51.5
Atru.chr4.3004 Acer truncatum HOM05D007976 ORTHO05D004405 3.2e-39 165.6 174 48.3
GSVIVG01034995001 Vitis vinifera HOM05D000260 ORTHO05D004405 7.2e-39 164.5 123 58.5
TAR362G0285 Trochodendron aralioides HOM05D000260 ORTHO05D004405 1.7e-35 153.3 124 55.6
Hma1.2p1_0013F.1_g008560 Hydrangea macrophylla HOM05D000260 ORTHO05D004405 3.7e-35 152.1 122 56.6
Dinv15172 Davidia involucrata HOM05D000260 ORTHO05D004405 4.8e-35 151.8 142 53.5
HanXRQChr05g0146061 Helianthus annuus HOM05D000260 ORTHO05D004405 1.7e-24 116.7 165 37.6
Ciclev10006996m.g Citrus clementina HOM05D000260 ORTHO05D004405 1.9e-23 113.2 129 48.8
MD06G1219200 Malus domestica HOM05D000260 ORTHO05D004405 1.2e-20 104.0 128 46.1
TAR629G0876 Trochodendron aralioides HOM05D000260 ORTHO05D004405 1.3e-19 100.5 128 43.8
TAR629G1802 Trochodendron aralioides HOM05D000260 ORTHO05D004405 1.4e-18 97.1 135 42.2
VMungo0251G3030 Vigna mungo HOM05D000072 ORTHO05D000026 1.4e-18 97.1 164 36.0
Lalb_Chr09g0331051 Lupinus albus HOM05D000072 ORTHO05D000026 9.2e-18 94.4 161 37.3
Lj2g0001936 Lotus japonicus HOM05D000260 ORTHO05D000318 4.5e-17 92.0 172 30.8
QL10p026060 Quercus lobata HOM05D000260 ORTHO05D004405 1.7e-16 90.1 129 40.3
RcHm_v2.0_Chr7g0186021 Rosa chinensis HOM05D000260 ORTHO05D004405 2.3e-16 89.7 126 41.3
Glyma.07G096000 Glycine max HOM05D000260 ORTHO05D004405 2.9e-16 89.4 116 39.7
Manes.05G132400 Manihot esculenta HOM05D000260 ORTHO05D004405 2.9e-16 89.4 122 42.6
Lj4g0027056 Lotus japonicus HOM05D000072 ORTHO05D000026 3.8e-16 89.0 160 35.6
RcHm_v2.0_Chr7g0185911 Rosa chinensis HOM05D000072 ORTHO05D000026 3.8e-16 89.0 126 41.3
FAN18G0416 Fragaria x ananassa HOM05D000260 ORTHO05D004405 1.1e-15 87.4 130 41.5
FAN18G2567 Fragaria x ananassa HOM05D000260 ORTHO05D004405 1.1e-15 87.4 130 41.5
VMungo0464G0601 Vigna mungo HOM05D000260 ORTHO05D004405 1.5e-15 87.0 127 37.8
Phvul.002G318200 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 1.9e-15 86.7 165 33.9
QL10p025892 Quercus lobata HOM05D000260 ORTHO05D004405 1.9e-15 86.7 122 36.9
Thecc.03G039500 Theobroma cacao HOM05D000260 ORTHO05D000318 2.5e-15 86.3 166 33.7
FvH4_5g11790 Fragaria vesca HOM05D000260 ORTHO05D004405 3.3e-15 85.9 130 40.8
FAN18G0413 Fragaria x ananassa HOM05D000260 ORTHO05D004405 3.3e-15 85.9 130 39.2
arahy.Tifrunner.gnm1.ann1.A5PQY8 Arachis hypogaea HOM05D000072 ORTHO05D000026 5.6e-15 85.1 119 38.7
arahy.Tifrunner.gnm1.ann1.HVZ2A0 Arachis hypogaea HOM05D000072 ORTHO05D000026 5.6e-15 85.1 119 38.7
RcHm_v2.0_Chr7g0185971 Rosa chinensis HOM05D000260 ORTHO05D000318 5.6e-15 85.1 171 33.3
RcHm_v2.0_Chr7g0185891 Rosa chinensis HOM05D000260 ORTHO05D004405 7.3e-15 84.7 114 42.1
QL10p026197 Quercus lobata HOM05D000260 ORTHO05D004405 9.5e-15 84.3 124 38.7
Dinv28134 Davidia involucrata HOM05D000260 ORTHO05D004405 1.2e-14 84.0 111 40.5
FAN13G0627 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.2e-14 84.0 177 35.0
Phvul.004G154700 Phaseolus vulgaris HOM05D000260 ORTHO05D004405 1.6e-14 83.6 126 34.9
FAN18G4313 Fragaria x ananassa HOM05D000072 ORTHO05D000410 2.8e-14 82.8 107 43.0
Haze_18720 Corylus avellana HOM05D000260 ORTHO05D004405 3.6e-14 82.4 115 42.6
Psat1g035960 Pisum sativum HOM05D000260 ORTHO05D004405 3.6e-14 82.4 120 38.3
RcHm_v2.0_Chr7g0185941 Rosa chinensis HOM05D000072 ORTHO05D004405 3.6e-14 82.4 113 40.7
Glyma.07G095200 Glycine max HOM05D000072 ORTHO05D000026 4.7e-14 82.0 155 32.3
Lalb_Chr14g0371001 Lupinus albus HOM05D000260 ORTHO05D004405 8.0e-14 81.3 114 39.5
RcHm_v2.0_Chr7g0210001 Rosa chinensis HOM05D000260 ORTHO05D004405 1.0e-13 80.9 113 40.7
Medtr6g082990 Medicago truncatula HOM05D000260 ORTHO05D004405 1.8e-13 80.1 117 39.3
PGR083G0967 Punica granatum HOM05D000260 ORTHO05D000318 1.8e-13 80.1 132 39.4
Cfa019742 Carpinus fangiana HOM05D000260 ORTHO05D000318 3.0e-13 79.3 116 41.4
COL.COLO4_07247 Corchorus olitorius HOM05D000260 ORTHO05D004405 3.0e-13 79.3 113 41.6
FAN04G2633 Fragaria x ananassa HOM05D000260 ORTHO05D004405 3.0e-13 79.3 112 42.9
Rhsim12G0142700 Rhododendron simsii HOM05D000260 ORTHO05D000318 4.0e-13 79.0 142 36.6
Thecc.03G038900 Theobroma cacao HOM05D000260 ORTHO05D004405 4.0e-13 79.0 114 38.6
CiPaw.16G088300 Carya illinoinensis HOM05D000260 ORTHO05D000318 5.2e-13 78.6 115 40.0
CiPaw.16G088400 Carya illinoinensis HOM05D000013 ORTHO05D000506 1.5e-12 77.0 116 37.1
Cpa.g.sc3.470 Carica papaya HOM05D000260 ORTHO05D004405 3.4e-12 75.9 114 40.4
Nitab4.5_0009862g0010 Nicotiana tabacum HOM05D000072 ORTHO05D000026 5.7e-12 75.1 109 37.6
DCAR_015152 Daucus carota HOM05D000260 ORTHO05D000318 2.9e-11 72.8 139 38.1
TPR.G24789 Trifolium pratense HOM05D000260 ORTHO05D004405 3.7e-11 72.4 118 34.7
FAN08G3525 Fragaria x ananassa HOM05D000072 ORTHO05D000026 8.3e-11 71.2 148 32.4
PGSC0003DMG401005729 Solanum tuberosum HOM05D000260 ORTHO05D000318 8.3e-11 71.2 158 31.6
Sopen03g038120 Solanum pennellii HOM05D000260 ORTHO05D000318 1.1e-10 70.9 158 31.6
FAN08G3010 Fragaria x ananassa HOM05D000260 ORTHO05D004405 4.1e-10 68.9 137 33.6
Solyc03g119230.1 Solanum lycopersicum HOM05D000260 ORTHO05D004405 5.4e-10 68.6 111 36.0
PGSC0003DMG400015839 Solanum tuberosum HOM05D000260 ORTHO05D004405 1.2e-09 67.4 110 38.2
PGSC0003DMG401015827 Solanum tuberosum HOM05D000260 ORTHO05D004405 1.2e-09 67.4 110 38.2
Dinv06158 Davidia involucrata HOM05D000260 ORTHO05D000318 1.6e-09 67.0 126 37.3
TAR627G0833 Trochodendron aralioides HOM05D000260 ORTHO05D004405 1.6e-09 67.0 81 45.7
Eucgr.B00797 Eucalyptus grandis HOM05D000260 ORTHO05D004405 2.7e-09 66.2 131 35.9
Peaxi162Scf00683g00037 Petunia axillaris HOM05D000072 ORTHO05D000318 2.7e-09 66.2 112 34.8
arahy.Tifrunner.gnm1.ann1.42LL83 Arachis hypogaea HOM05D000072 ORTHO05D000026 3.5e-09 65.9 112 39.3
Solyc12g036320.3 Solanum lycopersicum HOM05D000260 ORTHO05D004405 5.9e-09 65.1 112 37.5
Nitab4.5_0001536g0020 Nicotiana tabacum HOM05D000260 ORTHO05D000318 7.8e-09 64.7 117 33.3
arahy.Tifrunner.gnm1.ann1.FT6SUY Arachis hypogaea HOM05D000072 ORTHO05D000026 2.3e-08 63.2 112 38.4
Sopen12g016640 Solanum pennellii HOM05D000260 ORTHO05D004405 2.3e-08 63.2 112 36.6
GSVIVG01008327001 Vitis vinifera HOM05D000260 ORTHO05D000318 2.3e-08 63.2 161 31.1
Lsat_1_v5_gn_8_143900 Lactuca sativa HOM05D000260 ORTHO05D004405 3.0e-08 62.8 114 35.1
Peaxi162Scf00634g00516 Petunia axillaris HOM05D000072 ORTHO05D000026 3.0e-08 62.8 108 36.1
Peaxi162Scf00634g00518 Petunia axillaris HOM05D000260 ORTHO05D000318 3.0e-08 62.8 108 36.1
Peaxi162Scf79860g00002 Petunia axillaris HOM05D000260 ORTHO05D004405 3.0e-08 62.8 108 36.1
Carub.0001s1801 Capsella rubella HOM05D000260 ORTHO05D000318 3.9e-08 62.4 99 35.4
Dinv01101 Davidia involucrata HOM05D000260 ORTHO05D004405 6.6e-08 61.6 142 32.4
Dinv00976 Davidia involucrata HOM05D000260 ORTHO05D000318 1.1e-07 60.8 132 32.6
Lsat_1_v5_gn_8_142680 Lactuca sativa HOM05D000260 ORTHO05D004405 2.5e-07 59.7 114 37.7
Nitab4.5_0009862g0020 Nicotiana tabacum HOM05D000072 ORTHO05D000026 2.5e-07 59.7 127 30.7
Medtr6g083020 Medicago truncatula HOM05D000260 ORTHO05D000318 5.6e-07 58.5 170 28.2
CANSAT01G1855 Cannabis sativa HOM05D000072 ORTHO05D000026 7.3e-07 58.2 180 28.3
RcHm_v2.0_Chr6g0264401 Rosa chinensis HOM05D000260 ORTHO05D000318 9.5e-07 57.8 84 33.3
Lsat_1_v5_gn_0_19021 Lactuca sativa HOM05D000072 ORTHO05D000026 1.6e-06 57.0 124 33.9
FAN15G2298 Fragaria x ananassa HOM05D000260 ORTHO05D000318 3.6e-06 55.8 84 36.9
HPP92_000488 Vanilla planifolia HOM05D000072 ORTHO05D000026 4.7e-06 55.5 111 36.9
Eucgr.B00769 Eucalyptus grandis HOM05D000260 ORTHO05D000318 6.2e-06 55.1 131 31.3


User provided reference genes

Program Settings