Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 5.1e-142 507.7 248 100.0
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 4.6e-135 484.6 247 94.3
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 1.1e-91 340.5 206 73.3
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 1.8e-91 339.7 232 69.0
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 7.0e-91 337.8 206 72.8
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 1.3e-89 333.6 247 65.2
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 5.0e-89 331.6 201 74.1
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 8.6e-89 330.9 218 71.1
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 5.6e-88 328.2 200 75.0
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.6e-87 326.6 244 65.6
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 2.8e-87 325.9 210 71.4
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 4.7e-87 325.1 209 71.3
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 8.0e-87 324.3 211 70.1
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 1.0e-86 323.9 198 75.8
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 1.4e-86 323.6 198 74.7
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 5.2e-86 321.6 197 72.6
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 5.2e-86 321.6 235 63.0
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 8.9e-86 320.9 232 63.4
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 8.9e-86 320.9 200 70.5
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 1.2e-85 320.5 200 72.5
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 2.0e-85 319.7 200 75.0
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 2.0e-85 319.7 199 71.4
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 3.4e-85 318.9 200 71.5
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 4.4e-85 318.5 199 70.9
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 1.3e-84 317.0 229 65.1
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 1.7e-84 316.6 197 72.1
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 2.9e-84 315.8 235 65.1
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 3.7e-84 315.5 248 62.5
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 4.9e-84 315.1 198 72.2
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 6.4e-84 314.7 234 63.2
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 6.4e-84 314.7 208 67.3
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 8.3e-84 314.3 198 70.2
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 8.3e-84 314.3 246 61.8
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 8.3e-84 314.3 198 70.2
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 1.4e-83 313.5 199 70.4
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 1.9e-83 313.2 227 63.9
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 1.9e-83 313.2 210 67.6
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 3.2e-83 312.4 196 72.4
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 3.2e-83 312.4 196 72.4
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 5.4e-83 311.6 196 71.4
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 1.6e-82 310.1 198 72.7
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 2.7e-82 309.3 197 72.1
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 3.5e-82 308.9 211 67.8
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 4.6e-82 308.5 247 62.3
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 1.0e-81 307.4 213 67.1
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 1.3e-81 307.0 238 59.7
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 2.3e-81 306.2 213 66.7
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 2.3e-81 306.2 203 67.5
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 3.0e-81 305.8 196 72.4
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 3.9e-81 305.4 196 69.4
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 3.9e-81 305.4 212 64.6
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 3.9e-81 305.4 195 72.8
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 5.0e-81 305.1 240 59.6
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 6.6e-81 304.7 239 59.4
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 1.6e-79 300.1 197 69.0
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 2.1e-79 299.7 217 62.2
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 2.8e-79 299.3 196 67.9
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 3.6e-79 298.9 243 61.3
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 8.0e-79 297.7 198 68.7
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 1.1e-78 297.4 196 67.3
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 1.8e-78 296.6 226 61.9
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 6.8e-78 294.7 196 65.8
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 8.9e-78 294.3 196 66.3
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 1.5e-77 293.5 196 65.8
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 1.5e-77 293.5 234 57.3
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 2.0e-77 293.1 196 67.9
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 2.6e-77 292.7 196 69.4
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 4.4e-77 292.0 209 60.3
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 9.8e-77 290.8 196 67.9
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 1.3e-76 290.4 197 67.0
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 2.2e-76 289.7 196 67.9
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 3.7e-76 288.9 216 65.7
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 4.9e-76 288.5 200 66.0
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 3.2e-75 285.8 196 65.3
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 4.1e-75 285.4 219 59.8
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 3.5e-74 282.3 217 61.8
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 1.0e-73 280.8 166 75.3
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 5.1e-73 278.5 176 71.0
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 6.2e-71 271.6 221 58.8
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 2.3e-70 269.6 240 57.9
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 8.9e-70 267.7 196 65.3
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 1.4e-67 260.4 177 69.5
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 4.6e-66 255.4 167 69.5
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 1.0e-65 254.2 164 70.1
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 1.3e-65 253.8 195 62.1
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 3.6e-63 245.7 192 57.8
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 8.1e-63 244.6 202 52.0
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 1.8e-62 243.4 154 72.1
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 1.3e-60 237.3 196 56.1
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 9.2e-59 231.1 184 62.0
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 9.2e-59 231.1 214 50.5
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 4.6e-58 228.8 193 52.3
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 5.1e-57 225.3 133 73.7
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 1.9e-56 223.4 167 58.7
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 3.3e-56 222.6 161 64.0
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 3.6e-55 219.2 133 72.2
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 4.8e-47 192.2 121 71.1
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 2.4e-46 189.9 200 48.0
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 1.9e-43 180.3 119 70.6
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 4.2e-43 179.1 196 48.5
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 2.1e-39 166.8 104 68.3
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 2.1e-39 166.8 195 45.1
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 1.3e-36 157.5 182 41.2
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 1.9e-35 153.7 145 51.0
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 2.4e-30 136.7 89 62.9
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.6e-29 133.3 80 75.0
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 1.3e-25 120.9 87 63.2
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 1.2e-21 107.8 64 76.6
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 5.1e-17 92.4 60 70.0
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 4.3e-16 89.4 68 58.8
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 7.4e-16 88.6 54 72.2
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 7.4e-16 88.6 54 72.2
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 2.2e-15 87.0 59 67.8
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 6.9e-14 82.0 54 64.8
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 9.4e-11 71.6 74 48.6
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 3.6e-10 69.7 97 41.2
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 7.9e-10 68.6 92 42.4
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 7.9e-10 68.6 92 42.4
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 7.9e-10 68.6 92 42.4
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 1.8e-09 67.4 91 42.9


User provided reference genes

Program Settings