Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 8.4e-175 617.1 347 100.0
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 2.1e-72 276.9 190 91.1
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 1.2e-69 267.7 190 91.1
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 2.2e-66 256.9 147 93.2
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 3.5e-64 249.6 189 85.7
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 5.1e-63 245.7 194 82.0
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.5e-62 243.4 193 81.3
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 3.3e-62 243.0 193 85.5
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 5.6e-62 242.3 194 79.4
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 1.3e-61 241.1 194 72.2
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.6e-61 240.7 193 85.0
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 2.1e-61 240.4 190 76.8
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 2.8e-61 240.0 197 79.2
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 3.6e-61 239.6 194 80.4
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 3.6e-61 239.6 194 76.3
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.4e-60 237.7 191 83.8
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 3.1e-60 236.5 197 70.1
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 3.1e-60 236.5 300 52.7
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 5.3e-60 235.7 149 85.2
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 5.3e-60 235.7 186 73.7
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 6.9e-60 235.3 191 81.7
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 1.2e-59 234.6 149 85.2
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.5e-59 234.2 150 86.0
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.5e-59 234.2 190 82.1
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.4e-59 233.0 149 84.6
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 9.9e-59 231.5 144 84.7
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 9.9e-59 231.5 188 82.4
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 1.7e-58 230.7 194 76.8
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 2.2e-58 230.3 198 70.7
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 2.2e-58 230.3 197 75.1
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 2.9e-58 229.9 198 77.3
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 2.9e-58 229.9 198 79.3
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 4.9e-58 229.2 142 87.3
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 8.4e-58 228.4 191 70.7
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 8.4e-58 228.4 152 81.6
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 8.4e-58 228.4 150 82.0
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 1.1e-57 228.0 197 79.2
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 1.1e-57 228.0 142 84.5
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 1.4e-57 227.6 142 86.6
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 1.4e-57 227.6 197 71.6
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 4.2e-57 226.1 145 86.2
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 5.4e-57 225.7 149 83.9
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 5.4e-57 225.7 194 78.9
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 9.3e-57 224.9 193 79.8
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.6e-56 224.2 192 76.0
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 1.6e-56 224.2 147 83.0
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 2.1e-56 223.8 145 83.4
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 2.7e-56 223.4 203 70.0
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.7e-56 223.4 192 76.0
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.7e-56 223.4 190 78.4
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 2.7e-56 223.4 149 80.5
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 3.5e-56 223.0 142 85.2
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.0e-55 221.5 144 79.9
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 1.0e-55 221.5 191 74.3
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 1.3e-55 221.1 146 84.2
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.3e-55 221.1 192 80.7
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 2.3e-55 220.3 144 84.0
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 3.0e-55 219.9 131 90.8
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 3.0e-55 219.9 196 73.5
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 3.0e-55 219.9 198 78.3
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 3.9e-55 219.5 145 82.8
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 3.9e-55 219.5 150 80.7
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 5.1e-55 219.2 140 84.3
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 1.1e-54 218.0 148 81.1
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 1.5e-54 217.6 215 72.6
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.5e-54 217.6 142 83.1
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.5e-54 217.6 142 83.1
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.5e-54 216.9 148 77.7
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.5e-54 216.9 148 77.7
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 2.5e-54 216.9 145 80.7
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 3.3e-54 216.5 196 70.9
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 4.3e-54 216.1 146 80.8
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 5.6e-54 215.7 190 74.2
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 7.3e-54 215.3 144 80.6
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 1.6e-53 214.2 145 80.7
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 1.6e-53 214.2 134 89.6
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 2.1e-53 213.8 132 90.2
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 2.8e-53 213.4 145 80.7
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 2.8e-53 213.4 198 76.8
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 2.8e-53 213.4 195 75.4
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 2.8e-53 213.4 195 74.9
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 3.6e-53 213.0 195 72.8
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 4.8e-53 212.6 144 81.2
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 6.2e-53 212.2 145 80.7
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 8.1e-53 211.8 150 77.3
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 1.1e-52 211.5 144 79.9
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 1.1e-52 211.5 138 82.6
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.8e-52 210.7 145 78.6
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 1.8e-52 210.7 145 77.9
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 1.8e-52 210.7 144 77.1
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 2.4e-52 210.3 144 77.8
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 3.1e-52 209.9 198 77.8
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 4.0e-52 209.5 145 77.9
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 5.3e-52 209.1 144 77.1
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 5.3e-52 209.1 149 77.9
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 6.9e-52 208.8 152 78.3
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 6.9e-52 208.8 133 87.2
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 1.2e-51 208.0 145 78.6
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 1.2e-51 208.0 152 76.3
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 1.2e-51 208.0 152 76.3
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 1.2e-51 208.0 152 76.3
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 1.5e-51 207.6 144 76.4
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 4.5e-51 206.1 139 83.5
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 4.5e-51 206.1 151 77.5
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 4.5e-51 206.1 151 77.5
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 5.8e-51 205.7 151 78.1
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 5.8e-51 205.7 138 83.3
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 9.9e-51 204.9 130 86.2
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 1.3e-50 204.5 144 79.2
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 1.3e-50 204.5 194 77.3
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 1.7e-50 204.1 153 76.5
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 2.2e-50 203.8 151 76.2
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 2.9e-50 203.4 155 75.5
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 2.9e-50 203.4 151 76.2
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 2.9e-50 203.4 151 76.2
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 4.9e-50 202.6 147 78.9
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 6.4e-50 202.2 149 77.2
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 6.4e-50 202.2 154 74.0
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 6.4e-50 202.2 154 74.0
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 8.4e-50 201.8 154 74.0
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 8.4e-50 201.8 155 74.8
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 7.1e-49 198.7 147 77.6
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 9.3e-49 198.4 145 75.2
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 9.3e-49 198.4 141 78.7
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 2.1e-48 197.2 141 80.1
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 3.5e-48 196.4 139 79.9
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 6.0e-48 195.7 138 79.0
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 3.9e-47 193.0 142 73.2
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 5.1e-47 192.6 142 72.5
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 3.3e-46 189.9 138 79.0
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 5.6e-46 189.1 146 73.3
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 6.5e-42 175.6 148 66.2
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 1.4e-41 174.5 131 74.8
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 1.2e-40 171.4 128 71.1
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 2.7e-40 170.2 133 69.2
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 5.7e-38 162.5 114 79.8
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.3e-37 161.4 121 76.0
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 2.5e-33 147.1 134 64.9
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 1.2e-32 144.8 111 71.2
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 1.0e-31 141.7 203 55.7
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 7.4e-30 135.6 85 92.9
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 2.4e-28 130.6 127 58.3
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 5.3e-28 129.4 108 66.7
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 3.8e-26 123.2 112 64.3
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 8.8e-23 112.1 131 54.2
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 1.5e-22 111.3 107 58.9
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 1.3e-21 108.2 194 54.1
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.7e-21 107.8 99 63.6
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 4.8e-21 106.3 79 60.8
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 7.7e-19 99.0 90 65.6
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 7.7e-19 99.0 90 65.6
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 1.1e-17 95.1 86 66.3
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 3.0e-15 87.0 66 83.3
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 6.7e-15 85.9 72 70.8
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 3.3e-14 83.6 64 79.7
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 6.7e-07 59.3 60 45.0
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 5.7e-06 56.2 35 77.1


User provided reference genes

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