Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 7.2e-153 543.9 277 100.0
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 4.0e-127 458.4 267 87.6
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 1.1e-111 407.1 268 76.5
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.3e-106 389.4 268 74.6
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.3e-106 389.4 268 74.6
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 2.7e-99 365.9 269 68.8
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 2.4e-95 352.8 262 66.8
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 3.8e-93 345.5 262 66.0
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 8.4e-93 344.4 277 63.5
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 1.4e-92 343.6 262 64.9
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 4.2e-92 342.0 269 66.2
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 1.5e-89 333.6 264 64.0
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 2.5e-89 332.8 265 66.0
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 3.3e-89 332.4 262 63.7
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 2.1e-88 329.7 263 62.7
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 2.1e-88 329.7 258 64.0
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 1.1e-87 327.4 268 61.9
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 9.0e-87 324.3 263 61.2
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 1.2e-86 323.9 265 61.9
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 3.4e-86 322.4 278 60.1
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 7.6e-86 321.2 263 61.6
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 7.6e-86 321.2 263 61.2
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 1.3e-85 320.5 263 61.2
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 2.2e-85 319.7 264 61.4
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 4.9e-85 318.5 264 60.2
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 2.4e-84 316.2 264 59.8
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 3.2e-84 315.8 250 62.8
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 3.2e-84 315.8 264 59.8
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 7.1e-84 314.7 265 61.1
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 2.1e-83 313.2 262 59.2
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 4.6e-83 312.0 269 59.9
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 4.6e-83 312.0 269 59.9
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 6.0e-83 311.6 264 60.2
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 7.9e-83 311.2 269 62.1
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 1.3e-82 310.5 256 62.9
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 1.3e-82 310.5 261 59.4
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 1.3e-82 310.5 267 61.0
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 3.0e-82 309.3 257 58.8
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 5.1e-82 308.5 256 62.5
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 6.6e-82 308.1 273 56.8
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 8.7e-82 307.8 268 61.6
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 1.1e-81 307.4 265 60.0
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 1.1e-81 307.4 268 61.2
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 3.6e-80 302.4 244 61.1
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 3.6e-80 302.4 267 58.4
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 3.6e-80 302.4 271 56.1
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 6.2e-80 301.6 266 57.9
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 6.2e-80 301.6 281 57.3
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 2.4e-79 299.7 259 58.7
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 2.4e-79 299.7 252 58.7
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 5.3e-79 298.5 253 60.5
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 9.0e-79 297.7 270 56.3
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.2e-78 297.4 266 57.9
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 1.5e-78 297.0 256 60.5
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 2.6e-78 296.2 248 62.9
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 2.6e-78 296.2 263 58.6
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 3.4e-78 295.8 253 59.7
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 4.5e-78 295.4 248 62.9
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 4.5e-78 295.4 266 58.6
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 5.8e-78 295.0 263 59.7
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 9.9e-78 294.3 246 61.4
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 9.9e-78 294.3 266 57.5
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 1.3e-77 293.9 266 57.9
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 1.3e-77 293.9 266 58.3
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 1.3e-77 293.9 266 58.3
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 1.3e-77 293.9 266 58.3
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 1.7e-77 293.5 266 57.9
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 4.9e-77 292.0 266 57.5
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 4.9e-77 292.0 260 57.7
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 6.4e-77 291.6 263 57.4
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 8.4e-77 291.2 245 61.2
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 1.9e-76 290.0 248 62.5
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 3.2e-76 289.3 269 57.2
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 4.2e-76 288.9 263 57.8
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 5.5e-76 288.5 246 59.8
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 1.2e-75 287.3 269 53.9
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 1.6e-75 287.0 265 56.6
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 1.6e-75 287.0 268 58.2
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 4.6e-75 285.4 268 58.2
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 1.3e-74 283.9 256 54.7
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 3.0e-74 282.7 268 57.5
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 5.1e-74 282.0 264 55.7
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 6.7e-74 281.6 258 59.3
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 3.3e-73 279.3 224 61.6
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 9.6e-73 277.7 240 59.6
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 1.3e-72 277.3 265 56.6
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 1.6e-72 276.9 245 58.4
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 6.2e-72 275.0 232 59.5
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.4e-71 273.1 265 52.8
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 3.1e-71 272.7 252 53.6
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.2e-70 270.8 257 56.0
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 1.2e-70 270.8 229 58.1
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 2.0e-70 270.0 224 58.9
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 2.6e-70 269.6 269 55.0
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 2.6e-70 269.6 238 59.2
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.5e-70 268.9 266 54.1
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.8e-69 265.8 266 53.8
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 6.5e-69 265.0 237 57.0
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 1.4e-68 263.8 265 52.5
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.4e-68 263.8 210 63.8
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 2.5e-68 263.1 248 58.5
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 3.2e-68 262.7 242 57.9
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 1.0e-66 257.7 278 51.4
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 1.3e-66 257.3 265 54.0
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 1.3e-66 257.3 264 53.8
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 1.5e-65 253.8 240 56.2
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 5.3e-63 245.4 268 51.5
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 1.5e-62 243.8 268 51.5
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 7.6e-62 241.5 269 48.0
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.9e-61 239.6 206 57.3
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 2.5e-60 236.5 239 53.6
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.1e-57 227.6 216 56.0
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 3.3e-57 226.1 220 55.0
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 1.3e-56 224.2 266 48.5
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.4e-55 220.7 205 58.5
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 6.9e-55 218.4 240 51.7
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 4.2e-52 209.1 158 62.7
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 6.1e-51 205.3 242 47.9
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 2.2e-48 196.8 246 48.0
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.1e-47 194.5 234 44.4
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 1.5e-41 174.1 235 41.3
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.1e-36 157.9 109 63.3
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.0e-34 149.4 282 37.2
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 2.0e-33 147.1 209 40.7
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 2.6e-33 146.7 133 55.6
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 4.4e-33 146.0 169 45.6
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 5.7e-33 145.6 196 45.9
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.7e-32 144.1 177 43.5
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 4.8e-32 142.5 260 36.5
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 8.2e-32 141.7 231 34.6
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.0e-30 137.1 236 34.3
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 3.5e-30 136.3 236 36.9
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 7.7e-30 135.2 231 34.6
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 2.9e-29 133.3 159 44.0
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 1.1e-28 131.3 220 36.4
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 7.0e-23 112.1 157 42.7
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 3.7e-16 89.7 82 56.1
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 1.2e-14 84.7 93 55.9
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 1.2e-14 84.7 93 55.9
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 4.3e-12 76.3 188 31.9
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.2e-11 74.7 76 55.3
SMO118G0365 Selaginella moellendorffii HOM05D005143 ORTHO05D006404 4.0e-10 69.7 142 30.3
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 2.0e-06 57.4 92 32.6


User provided reference genes

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