Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 0.0e+00 1284.2 682 100.0
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 9.6e-308 1059.7 676 85.9
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.2e-234 815.5 675 69.2
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.2e-234 815.5 675 69.2
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 3.0e-216 755.7 675 64.7
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 7.8e-100 369.0 684 41.7
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 5.3e-88 329.7 710 39.7
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 8.4e-86 322.4 720 36.8
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 2.9e-78 297.4 722 34.9
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 8.7e-75 285.8 694 35.4
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.9e-74 284.6 657 37.3
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 5.6e-74 283.1 679 36.8
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 1.2e-71 275.4 675 34.8
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 1.3e-70 271.9 702 34.9
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 6.5e-70 269.6 741 33.6
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 2.7e-68 264.2 683 34.8
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 1.3e-65 255.4 690 34.9
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 1.5e-63 248.4 722 33.0
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 7.6e-63 246.1 694 34.4
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 7.2e-61 239.6 681 33.8
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 1.2e-60 238.8 689 34.4
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 2.1e-60 238.0 675 32.9
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 1.0e-59 235.7 660 33.9
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 1.3e-59 235.3 717 32.8
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 6.7e-59 233.0 674 33.8
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.6e-55 221.1 676 33.1
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 5.9e-55 219.9 715 32.2
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 2.9e-54 217.6 616 33.8
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 7.2e-53 213.0 681 31.6
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 9.4e-53 212.6 684 33.3
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 7.9e-52 209.5 681 32.7
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 3.9e-51 207.2 663 30.6
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 3.3e-50 204.1 650 32.2
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 2.2e-49 201.4 656 31.9
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 9.1e-48 196.1 721 31.1
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 2.3e-43 181.4 657 30.9
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.3e-43 181.4 680 30.7
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 8.8e-43 179.5 700 30.4
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 3.3e-42 177.6 666 30.3
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 4.4e-42 177.2 659 30.3
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.3e-41 175.6 661 28.9
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 7.0e-40 169.9 686 29.4
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 9.1e-40 169.5 568 32.4
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 3.5e-39 167.5 755 28.2
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 3.5e-39 167.5 655 29.9
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 5.9e-39 166.8 653 29.4
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 1.3e-38 165.6 672 28.4
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.7e-38 165.2 569 31.6
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 3.6e-36 157.5 654 29.4
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 3.0e-35 154.5 654 29.2
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.0e-35 154.1 170 55.9
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 5.2e-35 153.7 681 28.8
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 6.7e-35 153.3 657 27.5
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.1e-34 152.5 139 61.2
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 4.4e-34 150.6 680 28.5
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 2.2e-33 148.3 129 63.6
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 2.2e-33 148.3 129 67.4
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 2.2e-33 148.3 673 27.6
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 3.1e-32 144.4 203 48.8
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 4.1e-32 144.1 649 27.1
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 5.3e-32 143.7 685 28.8
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 1.2e-31 142.5 663 27.5
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.2e-31 142.5 694 28.2
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 2.0e-31 141.7 129 65.1
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 2.2e-30 138.3 124 64.5
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 3.8e-30 137.5 663 27.1
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 3.8e-30 137.5 637 28.7
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 8.5e-30 136.3 651 30.9
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.2e-29 134.0 386 33.2
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 4.2e-29 134.0 133 59.4
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 7.2e-29 133.3 672 27.1
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 9.4e-29 132.9 284 36.6
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.2e-28 132.5 672 29.3
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.1e-28 131.7 666 29.6
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 4.7e-28 130.6 680 26.8
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 2.3e-27 128.3 683 27.4
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 4.0e-27 127.5 670 30.3
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 5.2e-27 127.1 659 29.0
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 6.8e-27 126.7 652 27.1
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 8.8e-27 126.3 132 57.6
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 1.5e-26 125.6 669 28.8
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 2.0e-26 125.2 654 26.5
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 7.5e-26 123.2 667 25.9
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.7e-25 122.1 701 26.4
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 4.8e-25 120.6 659 26.3
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 8.3e-25 119.8 456 31.1
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 2.4e-24 118.2 672 29.3
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.6e-23 115.5 666 29.6
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.0e-23 115.2 116 58.6
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 3.5e-23 114.4 633 29.5
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.1e-21 109.4 646 26.2
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 1.1e-21 109.4 116 56.9
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.5e-21 109.0 658 26.4
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.9e-21 108.6 99 62.6
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.5e-21 108.2 124 52.4
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 3.2e-21 107.8 656 26.1
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 5.5e-21 107.1 642 24.5
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 7.2e-21 106.7 657 26.0
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 9.4e-21 106.3 115 54.8
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 3.6e-20 104.4 639 24.4
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 1.8e-19 102.1 117 52.1
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 3.0e-19 101.3 702 26.4
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 1.5e-18 99.0 670 24.3
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 4.4e-18 97.4 683 24.5
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 5.7e-18 97.1 679 23.9
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 9.8e-18 96.3 126 51.6
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 2.2e-17 95.1 648 25.5
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 2.8e-17 94.7 652 25.5
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 2.8e-17 94.7 118 50.8
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 1.2e-15 89.4 677 25.3
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 4.5e-15 87.4 566 25.4
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 7.7e-15 86.7 116 49.1
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 1.0e-14 86.3 589 25.5
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 1.0e-14 86.3 652 25.6
Sabra10G0107100 Salix brachista HOM05D001752 ORTHO05D003933 3.8e-14 84.3 60 66.7
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.1e-13 82.8 127 42.5
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 1.5e-13 82.4 153 41.2
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 4.3e-13 80.9 304 28.9
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 5.6e-13 80.5 92 55.4
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 9.5e-13 79.7 116 44.8
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 1.2e-12 79.3 106 46.2
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 2.8e-12 78.2 68 63.2
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 3.6e-12 77.8 345 30.7
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 6.1e-12 77.0 119 44.5
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 1.8e-11 75.5 646 23.8
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.8e-11 75.5 684 25.4
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 6.8e-11 73.6 111 47.7
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 2.6e-10 71.6 126 38.1
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 5.7e-10 70.5 553 23.9
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 7.5e-10 70.1 483 26.5
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.1e-08 66.2 55 60.0
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 1.4e-08 65.9 120 43.3
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 5.4e-08 63.9 111 42.3
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 2.0e-07 62.0 823 22.8
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 2.7e-07 61.6 37 83.8
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.0e-06 59.7 531 23.9


User provided reference genes

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