Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 0.0e+00 1455.7 755 100.0
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 0.0e+00 1406.3 784 93.9
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 0.0e+00 1241.9 784 82.1
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 0.0e+00 1235.7 784 82.3
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 0.0e+00 1228.4 777 82.2
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 0.0e+00 1220.3 785 80.6
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 0.0e+00 1207.6 777 79.9
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 0.0e+00 1203.3 777 79.7
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 0.0e+00 1201.8 777 80.2
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 0.0e+00 1200.7 777 79.7
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 0.0e+00 1200.7 784 80.0
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 0.0e+00 1199.1 785 80.0
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 0.0e+00 1193.3 784 79.6
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 0.0e+00 1183.7 786 78.9
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 0.0e+00 1181.4 779 79.3
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 0.0e+00 1180.2 782 79.7
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 0.0e+00 1177.5 773 79.8
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 0.0e+00 1176.0 784 78.4
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 0.0e+00 1175.6 773 78.9
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 0.0e+00 1170.2 780 78.2
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 0.0e+00 1165.6 784 76.9
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 0.0e+00 1159.1 790 77.1
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 0.0e+00 1158.3 780 77.3
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 0.0e+00 1157.9 780 77.4
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 0.0e+00 1157.9 787 76.6
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 0.0e+00 1156.0 784 76.4
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 0.0e+00 1155.6 780 76.9
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 0.0e+00 1154.8 784 76.9
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 0.0e+00 1154.4 781 76.8
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 0.0e+00 1154.4 775 78.2
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 0.0e+00 1154.4 781 77.1
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 0.0e+00 1152.1 780 77.6
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 0.0e+00 1151.7 786 76.6
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 0.0e+00 1150.6 782 78.1
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 0.0e+00 1149.4 784 75.6
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 0.0e+00 1149.4 782 77.5
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 0.0e+00 1149.4 781 77.3
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 0.0e+00 1148.3 782 77.5
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 0.0e+00 1146.7 780 77.2
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 0.0e+00 1146.0 783 74.7
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 0.0e+00 1146.0 784 75.4
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 0.0e+00 1145.2 780 77.2
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 0.0e+00 1143.3 785 75.7
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 0.0e+00 1142.5 782 77.9
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 0.0e+00 1142.1 780 77.1
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 0.0e+00 1141.7 783 75.9
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 0.0e+00 1140.2 784 75.1
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 0.0e+00 1139.0 780 76.9
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 0.0e+00 1138.3 786 76.2
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 0.0e+00 1134.8 779 75.5
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 0.0e+00 1132.9 779 75.0
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 0.0e+00 1132.1 782 76.9
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 0.0e+00 1129.0 776 75.5
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 0.0e+00 1128.6 770 77.3
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 0.0e+00 1128.6 782 75.7
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 0.0e+00 1127.9 777 76.6
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 0.0e+00 1123.6 823 72.4
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 0.0e+00 1123.2 753 76.9
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 0.0e+00 1122.8 781 75.7
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 0.0e+00 1122.5 782 74.8
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 0.0e+00 1120.5 781 75.5
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 0.0e+00 1120.5 769 75.0
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 0.0e+00 1119.4 783 75.4
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 0.0e+00 1119.4 775 75.7
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 0.0e+00 1114.0 770 74.3
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 0.0e+00 1113.6 755 75.8
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 0.0e+00 1108.2 847 70.5
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 0.0e+00 1107.0 786 74.2
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 0.0e+00 1107.0 851 70.3
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 0.0e+00 1105.9 780 74.1
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 0.0e+00 1105.9 774 73.8
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 0.0e+00 1104.7 794 73.9
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 0.0e+00 1104.7 778 74.2
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 0.0e+00 1104.0 770 74.4
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 0.0e+00 1104.0 778 74.0
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 0.0e+00 1103.6 786 72.6
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 0.0e+00 1101.3 780 73.3
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 0.0e+00 1101.3 765 74.0
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 0.0e+00 1097.4 779 73.7
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 0.0e+00 1093.6 781 73.4
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 0.0e+00 1092.4 761 74.0
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 0.0e+00 1085.1 700 80.4
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 0.0e+00 1085.1 780 74.1
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 0.0e+00 1084.3 783 72.2
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 0.0e+00 1083.2 781 72.7
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 0.0e+00 1082.8 773 73.7
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 0.0e+00 1082.4 778 73.8
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 0.0e+00 1081.6 784 71.8
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 0.0e+00 1078.2 785 72.1
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 0.0e+00 1076.2 784 73.0
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 1.8e-310 1068.9 784 71.3
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 3.0e-310 1068.1 739 76.6
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 6.7e-310 1067.0 760 73.6
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 2.4e-307 1058.5 794 71.4
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 2.9e-305 1051.6 785 71.2
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 1.9e-304 1048.9 779 71.8
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 3.5e-303 1044.6 766 73.8
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 6.0e-303 1043.9 899 64.1
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 5.3e-299 1030.8 780 69.1
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 2.6e-298 1028.5 783 70.8
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 3.8e-297 1024.6 976 60.0
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 5.0e-297 1024.2 755 71.9
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 8.4e-297 1023.5 783 70.2
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 1.6e-292 1009.2 776 68.9
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 1.2e-282 976.5 620 82.1
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 1.5e-282 976.1 784 66.2
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.2e-281 972.2 780 68.1
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 1.8e-267 926.0 772 63.6
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 3.1e-267 925.2 788 61.0
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 5.5e-264 914.4 733 68.3
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 9.8e-261 903.7 657 71.1
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 4.1e-259 898.3 785 60.0
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 3.7e-252 875.2 608 77.0
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 5.9e-242 841.3 547 77.9
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 2.1e-239 832.8 590 73.6
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 2.4e-235 819.3 764 57.3
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 6.4e-212 741.5 867 48.3
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 1.1e-203 714.1 721 57.6
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 2.4e-203 713.0 782 50.5
ClCG08G005060 Citrullus lanatus HOM05D003653 ORTHO05D004249 9.6e-192 674.5 701 56.8
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 3.7e-191 672.5 578 64.4
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 1.1e-168 597.8 377 83.0
ECA232G2537 Erigeron canadensis HOM05D003653 ORTHO05D004249 4.4e-160 569.3 501 62.5
CSS0022852 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.1e-155 554.7 359 79.4
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 1.5e-155 554.3 466 66.3
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 7.7e-149 531.9 963 36.4
Haze_16164 Corylus avellana HOM05D003653 ORTHO05D004249 3.0e-124 450.3 392 62.8
Lj6A103G48 Lonicera japonica HOM05D003653 ORTHO05D004249 2.5e-123 447.2 353 67.7
Lj6C103G5 Lonicera japonica HOM05D003653 ORTHO05D004249 9.8e-120 435.3 442 59.7
CAN.G1364.1 Capsicum annuum HOM05D003653 ORTHO05D004249 2.9e-119 433.7 426 59.2
SEGI_38760 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 2.6e-112 410.6 311 69.5
PRCOL_00003556 Prasinoderma coloniale HOM05D003653 ORTHO05D004249 5.1e-108 396.4 834 33.5
Solyc07g017520.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 1.1e-97 362.1 253 73.9
CSS0010075 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 3.0e-84 317.4 203 83.7
Solyc07g017530.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 1.6e-77 295.0 216 69.0
TAR383G1054 Trochodendron aralioides HOM05D003653 ORTHO05D004249 4.5e-72 276.9 335 53.1
CDE09G1393 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 1.9e-70 271.6 220 65.0
Nitab4.5_0022446g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 4.2e-70 270.4 210 68.1
RcHm_v2.0_Chr2g0096141 Rosa chinensis HOM05D003653 ORTHO05D004249 2.9e-63 247.7 146 84.9
Haze_06171 Corylus avellana HOM05D003653 ORTHO05D004249 1.0e-60 239.2 151 85.4
SEGI_20709 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 1.5e-59 235.3 192 63.0
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 1.7e-58 231.9 198 63.6
ClCG08G005090 Citrullus lanatus HOM05D003653 ORTHO05D004249 9.1e-57 226.1 166 69.9
Nitab4.5_0000055g0040 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.0e-55 222.6 180 67.2
Actinidia26999 Actinidia chinensis HOM05D003653 ORTHO05D004249 2.2e-47 194.9 137 78.1
QL02p096242 Quercus lobata HOM05D003653 ORTHO05D004249 1.1e-46 192.6 162 62.3
BraA02t06914Z Brassica rapa HOM05D003653 ORTHO05D004249 1.4e-44 185.7 144 68.8
Cfa023740 Carpinus fangiana HOM05D003653 ORTHO05D004249 9.7e-43 179.5 686 24.5
QL02p096270 Quercus lobata HOM05D003653 ORTHO05D004249 2.6e-40 171.4 137 68.6
Lsat_1_v5_gn_7_58641 Lactuca sativa HOM05D003653 ORTHO05D004249 3.8e-39 167.5 110 81.8
Lsat_1_v5_gn_2_26321 Lactuca sativa HOM05D003653 ORTHO05D004249 2.5e-38 164.9 110 80.9
Haze_16166 Corylus avellana HOM05D003653 ORTHO05D004249 7.2e-38 163.3 114 81.6
Lsat_1_v5_gn_2_82101 Lactuca sativa HOM05D003653 ORTHO05D004249 1.6e-37 162.2 110 79.1
Lsat_1_v5_gn_4_28660 Lactuca sativa HOM05D003653 ORTHO05D004249 1.0e-36 159.5 110 80.0
Lsat_1_v5_gn_5_93841 Lactuca sativa HOM05D003653 ORTHO05D004249 1.8e-36 158.7 110 78.2
SEGI_20750 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 5.7e-35 153.7 113 69.0
Gorai.013G153500 Gossypium raimondii HOM05D003653 ORTHO05D004249 2.2e-34 151.8 106 76.4
Haze_19192 Corylus avellana HOM05D003653 ORTHO05D004249 5.9e-32 143.7 126 68.3
Oeu030621.1 Olea europaea HOM05D003653 ORTHO05D004249 6.5e-31 140.2 131 62.6
CAN.G4608.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.0e-28 132.9 130 55.4
Gohir.D08G133700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.0e-28 132.9 106 66.0
TAR383G0271 Trochodendron aralioides HOM05D003653 ORTHO05D004249 2.3e-28 131.7 86 77.9
Gorai.004G136800 Gossypium raimondii HOM05D003653 ORTHO05D004249 5.2e-28 130.6 115 61.7
SEGI_01409 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 8.8e-28 129.8 117 60.7
Gohir.D13G136950 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.5e-27 129.0 96 72.9
CiPaw.07G188100 Carya illinoinensis HOM05D003653 ORTHO05D004249 3.7e-26 124.4 117 59.0
Lsat_1_v5_gn_7_30301 Lactuca sativa HOM05D003653 ORTHO05D004249 3.7e-26 124.4 72 86.1
Nitab4.5_0000055g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 3.5e-24 117.9 82 79.3
ECA232G0158 Erigeron canadensis HOM05D003653 ORTHO05D004249 1.1e-22 112.8 93 62.4
Lsat_1_v5_gn_2_18300 Lactuca sativa HOM05D003653 ORTHO05D004249 1.9e-22 112.1 65 87.7
CSS0010583 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 5.5e-22 110.5 61 85.2
SEGI_27322 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 5.2e-20 104.0 62 80.6
CSS0016569 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 3.4e-19 101.3 59 81.4
CSS0022673 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 2.2e-18 98.6 49 87.8
Sopen07g006330 Solanum pennellii HOM05D000004 ORTHO05D000002 2.2e-18 98.6 89 60.7
CAN.G12730.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.1e-17 96.3 79 65.8
CSS0016294 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 5.0e-15 87.4 69 68.1
VMungo1215G0910 Vigna mungo HOM05D003653 ORTHO05D004249 4.3e-14 84.3 107 50.5
Medtr8g018610 Medicago truncatula HOM05D003653 ORTHO05D004249 4.7e-13 80.9 48 79.2
Haze_16165 Corylus avellana HOM05D003653 ORTHO05D004249 5.2e-12 77.4 143 38.5
MCO01G230 Micromonas commoda HOM05D003653 ORTHO05D004249 5.2e-12 77.4 179 26.8
MBI08_g05369_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 1.2e-11 76.3 55 72.7
CSS0016412 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 6.0e-08 63.9 34 82.4
Lsat_1_v5_gn_6_63001 Lactuca sativa HOM05D003653 ORTHO05D004249 8.6e-07 60.1 34 85.3


User provided reference genes

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