Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 0.0e+00 1120.5 541 100.0
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 3.7e-270 934.5 499 90.6
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 6.0e-236 820.8 463 84.2
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 2.9e-230 802.0 463 82.5
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 9.3e-213 743.8 503 71.4
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 1.4e-200 703.4 464 70.5
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 1.3e-198 696.8 499 66.7
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 8.4e-198 694.1 504 65.7
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 1.1e-197 693.7 503 67.0
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 2.4e-197 692.6 501 66.1
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 7.1e-197 691.0 528 62.9
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 1.2e-196 690.3 461 70.5
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 2.7e-196 689.1 504 66.9
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 7.9e-196 687.6 468 70.9
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 6.7e-195 684.5 498 65.7
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 1.5e-194 683.3 462 69.0
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 1.9e-194 682.9 504 66.9
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 2.8e-193 679.1 500 65.6
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 1.4e-192 676.8 467 69.6
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 3.1e-192 675.6 468 69.0
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 9.0e-192 674.1 502 65.3
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 4.5e-191 671.8 469 68.2
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.8e-191 671.4 469 68.2
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 2.9e-190 669.1 462 68.8
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 8.4e-190 667.5 529 63.3
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.9e-189 666.4 463 69.3
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 2.5e-189 666.0 466 68.2
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 1.3e-187 660.2 502 63.5
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 3.9e-187 658.7 501 63.3
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 5.7e-186 654.8 553 59.3
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 9.6e-186 654.1 501 63.3
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 6.9e-184 647.9 465 66.5
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 9.0e-184 647.5 464 66.2
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 1.0e-179 634.0 504 61.3
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 1.0e-179 634.0 505 60.6
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 5.7e-178 628.2 467 64.7
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 2.8e-177 625.9 500 62.8
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 1.1e-176 624.0 464 63.6
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 1.4e-176 623.6 469 63.1
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 2.4e-176 622.9 499 60.9
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 3.1e-176 622.5 467 64.2
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 2.0e-175 619.8 462 63.9
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 2.6e-175 619.4 466 64.4
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 4.5e-175 618.6 427 69.3
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 5.5e-173 611.7 467 64.9
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 5.5e-173 611.7 468 63.0
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 5.5e-173 611.7 480 61.2
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 7.2e-173 611.3 463 64.1
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 9.4e-173 610.9 529 59.5
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 2.1e-172 609.8 460 65.0
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 6.1e-172 608.2 463 63.9
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 1.0e-171 607.4 463 64.6
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 1.0e-171 607.4 467 61.9
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.4e-171 607.1 530 58.7
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 2.3e-171 606.3 468 62.4
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 2.0e-170 603.2 462 62.8
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 5.7e-170 601.7 503 60.0
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 3.7e-169 599.0 467 61.2
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 1.1e-168 597.4 469 61.6
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.4e-168 596.3 493 60.4
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.4e-168 596.3 493 60.4
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 2.4e-168 596.3 471 61.8
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 5.3e-168 595.1 471 61.8
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 2.0e-167 593.2 541 56.7
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 1.0e-166 590.9 469 62.7
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.4e-165 587.0 501 57.3
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 2.5e-165 586.3 470 61.1
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 1.2e-164 583.9 489 58.9
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 6.1e-164 581.6 464 61.0
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 1.0e-163 580.9 470 60.2
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 2.8e-161 572.8 487 57.7
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 1.2e-159 567.4 499 57.1
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 4.5e-159 565.5 491 57.6
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 7.7e-159 564.7 491 58.0
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 5.5e-157 558.5 466 57.9
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.7e-156 556.2 583 49.6
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 3.0e-155 552.7 489 56.4
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 5.2e-155 552.0 465 57.8
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 2.0e-154 550.1 468 59.4
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 3.3e-154 549.3 489 55.6
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 7.5e-154 548.1 460 58.9
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 1.3e-153 547.4 489 55.8
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 1.3e-153 547.4 489 55.8
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 1.7e-153 547.0 489 56.0
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.8e-153 546.2 468 58.1
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 8.0e-148 528.1 502 54.8
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 8.0e-148 528.1 467 57.4
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 4.1e-144 515.8 467 52.9
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.6e-140 503.8 435 56.8
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 3.0e-139 499.6 482 51.0
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 1.3e-137 494.2 471 51.0
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 2.2e-137 493.4 463 54.2
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 3.4e-130 469.5 323 67.2
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 2.4e-120 436.8 330 63.0
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 1.9e-117 427.2 354 61.3
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 1.2e-116 424.5 297 69.7
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 2.4e-107 393.7 480 42.1
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 3.2e-104 383.3 294 63.6
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 2.1e-103 380.6 356 54.8
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 9.6e-93 345.1 474 39.9
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 3.8e-89 333.2 277 60.3
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 4.9e-89 332.8 475 41.1
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 8.4e-89 332.0 277 60.3
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 2.1e-84 317.4 463 37.4
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 1.4e-83 314.7 220 62.3
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 1.8e-83 314.3 266 59.8
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 3.2e-80 303.5 280 51.4
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 8.4e-73 278.9 306 49.7
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 9.7e-69 265.4 200 64.0
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 4.6e-63 246.5 242 52.9
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 2.2e-60 237.7 355 37.5
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 1.2e-37 162.2 118 67.8
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.3e-36 158.7 347 32.9
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 5.9e-34 149.8 105 69.5
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 1.0e-25 122.5 76 71.1
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 1.0e-25 122.5 92 64.1
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 3.4e-21 107.5 112 48.2
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 9.8e-21 105.9 75 66.7
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 7.8e-18 96.3 53 79.2
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.8e-17 94.0 53 79.2
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.1e-16 92.4 53 77.4
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.1e-16 92.4 53 77.4
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 9.5e-16 89.4 53 77.4
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 6.1e-15 86.7 90 44.4
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 8.9e-14 82.8 146 34.2
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 1.3e-12 79.0 39 87.2
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 4.1e-11 73.9 77 42.9
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 1.6e-10 72.0 70 51.4
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.5e-08 64.7 53 60.4
ECA247G1102 Erigeron canadensis HOM05D003337 ORTHO05D003808 1.8e-06 58.5 54 55.6
PRCOL_00006080 Prasinoderma coloniale HOM05D002042 ORTHO05D003928 1.8e-06 58.5 132 31.1
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 2.3e-06 58.2 100 41.0


User provided reference genes

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