Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 1.0e-227 793.1 407 100.0
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 2.9e-227 791.6 407 99.8
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 9.2e-165 583.9 411 76.9
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 1.1e-138 497.3 410 67.3
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 1.6e-137 493.4 417 66.7
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.6e-135 486.1 408 66.9
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 5.8e-135 485.0 408 66.7
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.7e-134 483.4 408 66.7
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 6.4e-134 481.5 411 66.9
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 1.9e-133 479.9 411 65.5
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 2.1e-132 476.5 412 66.0
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 2.7e-132 476.1 411 66.4
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 6.7e-131 471.5 407 64.4
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 8.7e-131 471.1 408 64.2
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 5.6e-130 468.4 418 64.8
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 7.4e-130 468.0 418 65.3
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 1.3e-129 467.2 412 65.0
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 2.8e-129 466.1 414 63.8
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 3.1e-128 462.6 393 66.7
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 4.0e-128 462.2 413 64.9
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 5.3e-128 461.8 417 63.5
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 9.0e-128 461.1 373 68.6
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 1.5e-127 460.3 383 66.6
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 5.8e-127 458.4 409 64.5
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 5.8e-127 458.4 405 64.2
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 5.8e-127 458.4 415 63.9
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 7.6e-127 458.0 417 62.4
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.4e-125 453.8 265 85.7
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 1.4e-125 453.8 265 85.7
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.9e-125 453.4 259 88.4
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.9e-125 453.4 349 69.6
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 2.5e-125 453.0 406 62.8
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 2.5e-125 453.0 259 88.0
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 9.3e-125 451.1 260 86.9
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 9.3e-125 451.1 407 63.6
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 9.3e-125 451.1 409 63.6
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 1.6e-124 450.3 383 65.3
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 2.7e-124 449.5 410 63.9
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.7e-124 449.5 259 86.1
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 4.6e-124 448.7 253 88.5
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 4.6e-124 448.7 351 69.2
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 6.0e-124 448.4 256 86.3
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.0e-123 447.6 260 86.2
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.0e-123 447.6 255 87.5
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 1.3e-123 447.2 368 66.8
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.3e-123 447.2 413 61.7
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 2.3e-123 446.4 265 84.2
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.3e-123 446.4 259 85.3
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 2.3e-123 446.4 407 62.9
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 2.3e-123 446.4 263 84.4
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 2.3e-123 446.4 265 85.3
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 3.0e-123 446.0 259 86.1
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 3.9e-123 445.7 418 61.2
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 5.1e-123 445.3 260 86.2
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 5.1e-123 445.3 414 62.8
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 8.7e-123 444.5 411 63.0
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.1e-122 444.1 265 84.9
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 1.9e-122 443.4 265 83.8
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 1.9e-122 443.4 411 61.1
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.9e-122 443.4 252 88.5
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 1.9e-122 443.4 265 84.5
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 3.3e-122 442.6 264 84.1
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 4.3e-122 442.2 258 86.0
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 4.3e-122 442.2 258 86.0
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 4.3e-122 442.2 258 86.0
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 5.7e-122 441.8 407 62.4
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 7.4e-122 441.4 265 84.2
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 9.7e-122 441.0 265 83.8
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.3e-121 440.7 259 86.5
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 1.6e-121 440.3 258 86.0
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 2.2e-121 439.9 269 82.5
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 2.2e-121 439.9 265 82.6
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 2.2e-121 439.9 265 82.6
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 2.2e-121 439.9 265 82.6
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 2.8e-121 439.5 259 85.3
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 2.8e-121 439.5 287 79.1
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 2.8e-121 439.5 264 82.6
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 3.7e-121 439.1 258 85.3
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 3.7e-121 439.1 258 85.3
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 3.7e-121 439.1 406 62.3
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 4.8e-121 438.7 255 86.7
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 6.3e-121 438.3 257 86.4
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 1.1e-120 437.6 411 62.8
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.1e-120 437.6 258 86.0
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.4e-120 437.2 417 60.2
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 2.4e-120 436.4 269 82.5
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 2.4e-120 436.4 255 85.9
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 3.1e-120 436.0 413 60.3
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.1e-120 436.0 413 60.5
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.1e-120 436.0 413 60.3
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.1e-120 436.0 413 60.3
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 4.1e-120 435.6 258 84.5
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 4.1e-120 435.6 270 81.9
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 5.3e-120 435.3 264 82.6
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 5.3e-120 435.3 271 81.9
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 5.3e-120 435.3 271 81.9
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 5.3e-120 435.3 402 60.2
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 6.9e-120 434.9 258 84.5
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 6.9e-120 434.9 271 81.5
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 9.0e-120 434.5 258 84.5
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.2e-119 434.1 410 61.2
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.2e-119 434.1 258 85.3
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 4.5e-119 432.2 258 84.1
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 4.5e-119 432.2 254 83.5
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 5.9e-119 431.8 410 60.7
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 7.7e-119 431.4 260 81.9
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 7.7e-119 431.4 254 86.2
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 1.3e-118 430.6 265 80.4
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 1.3e-118 430.6 260 83.8
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 2.9e-118 429.5 258 84.1
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 5.0e-118 428.7 408 61.0
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 8.5e-118 427.9 254 85.4
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 1.4e-117 427.2 405 60.5
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.9e-117 426.8 269 79.9
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 3.2e-117 426.0 413 61.0
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 5.1e-115 418.7 267 79.0
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 6.7e-115 418.3 244 87.3
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 3.3e-114 416.0 259 81.1
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 2.2e-113 413.3 328 69.5
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.5e-111 407.1 409 57.7
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 7.7e-111 404.8 263 77.9
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 7.7e-111 404.8 249 81.9
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 1.7e-110 403.7 248 82.7
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 3.8e-110 402.5 225 88.4
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 6.5e-110 401.7 506 50.0
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 9.4e-109 397.9 308 69.2
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.2e-108 397.5 256 79.7
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.8e-107 393.7 249 79.5
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 8.8e-107 391.3 251 78.9
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 9.7e-106 387.9 262 75.2
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 2.2e-105 386.7 245 77.6
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 3.7e-105 386.0 257 75.9
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 3.7e-105 386.0 257 79.0
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.1e-104 384.4 247 77.7
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 7.2e-101 371.7 214 84.6
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 8.2e-97 358.2 250 69.6
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 5.5e-93 345.5 252 73.4
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 7.5e-90 335.1 250 67.6
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 1.1e-88 331.3 248 68.5
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 4.5e-87 325.9 197 82.7
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 3.1e-80 303.1 354 53.1
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 7.5e-66 255.4 160 80.0
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 3.6e-60 236.5 148 81.1
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 8.0e-60 235.3 168 71.4
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 2.5e-53 213.8 126 81.7
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 2.5e-53 213.8 126 81.7
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.6e-47 194.5 108 92.6
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.1e-36 157.5 102 79.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.6e-36 156.8 99 80.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 2.2e-33 147.5 129 63.6
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.6e-28 131.3 87 74.7
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 4.9e-25 119.8 102 65.7
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 3.3e-21 107.1 64 87.5
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 4.3e-21 106.7 61 85.2


User provided reference genes

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