Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0071900 Salix brachista HOM05D006757 ORTHO05D004651 0.0e+00 1622.4 848 100.0
Potri.010G099300 Populus trichocarpa HOM05D006757 ORTHO05D004651 8.5e-221 771.2 595 69.1
Duzib248G0842 Durio zibethinus HOM05D006757 ORTHO05D004651 3.3e-188 662.9 700 54.4
Gohir.A01G144000 Gossypium hirsutum HOM05D006757 ORTHO05D004651 2.8e-187 659.8 858 46.6
Thecc.02G299300 Theobroma cacao HOM05D006757 ORTHO05D004651 3.7e-184 649.4 861 46.1
Manes.17G092000 Manihot esculenta HOM05D006757 ORTHO05D004651 9.2e-183 644.8 522 64.6
Gohir.D01G136700 Gossypium hirsutum HOM05D006757 ORTHO05D004651 5.9e-182 642.1 862 45.5
Gorai.002G169200 Gossypium raimondii HOM05D006757 ORTHO05D004651 1.3e-181 641.0 862 45.5
Prupe.1G340900 Prunus persica HOM05D006757 ORTHO05D004651 1.3e-181 641.0 868 46.3
CiPaw.05G164400 Carya illinoinensis HOM05D006757 ORTHO05D004651 3.0e-181 639.8 653 54.2
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 3.3e-180 636.3 783 48.1
TWI53G1444 Tripterygium wilfordii HOM05D006757 ORTHO05D004651 3.3e-180 636.3 695 52.4
MD16G1009700 Malus domestica HOM05D006757 ORTHO05D004651 2.9e-176 623.2 868 44.0
QL03p041041 Quercus lobata HOM05D006757 ORTHO05D004651 1.2e-171 607.8 965 41.0
TAR622G0072 Trochodendron aralioides HOM05D006757 ORTHO05D004651 4.7e-171 605.9 866 43.6
CSS0018736 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 2.0e-169 600.5 824 44.4
GSVIVG01010290001 Vitis vinifera HOM05D006757 ORTHO05D004651 1.2e-166 591.3 747 46.9
FAN17G2536 Fragaria x ananassa HOM05D006757 ORTHO05D004651 3.5e-166 589.7 864 43.5
Dinv02708 Davidia involucrata HOM05D006757 ORTHO05D004651 2.3e-165 587.0 860 43.4
RcHm_v2.0_Chr4g0445651 Rosa chinensis HOM05D006757 ORTHO05D004651 2.3e-165 587.0 854 43.2
PGR142G0977 Punica granatum HOM05D006757 ORTHO05D004651 3.0e-165 586.6 798 43.6
Nn4g24781 Nelumbo nucifera HOM05D006757 ORTHO05D004651 4.7e-163 579.3 831 42.5
Actinidia12418 Actinidia chinensis HOM05D006757 ORTHO05D004651 8.1e-163 578.6 861 42.4
FAN12G3615 Fragaria x ananassa HOM05D006757 ORTHO05D004651 2.5e-156 557.0 862 42.3
FAN22G1875 Fragaria x ananassa HOM05D006757 ORTHO05D004651 2.2e-152 543.9 898 40.4
CANSAT78G0289 Cannabis sativa HOM05D006757 ORTHO05D004651 2.9e-152 543.5 627 49.8
Ciclev10006553m.g Citrus clementina HOM05D006757 ORTHO05D004651 7.1e-151 538.9 525 56.8
FAN07G0462 Fragaria x ananassa HOM05D006757 ORTHO05D004651 7.8e-150 535.4 862 41.0
Ca_11197_v3 Cicer arietinum L. HOM05D006757 ORTHO05D004651 1.9e-148 530.8 704 47.4
MELO3C005216.2 Cucumis melo HOM05D006757 ORTHO05D004651 7.3e-148 528.9 614 48.4
Lj5g0011768 Lotus japonicus HOM05D006757 ORTHO05D004651 4.8e-147 526.2 662 47.1
ClCG01G006950 Citrullus lanatus HOM05D006757 ORTHO05D004651 1.4e-146 524.6 630 47.8
FvH4_4g36030 Fragaria vesca HOM05D006757 ORTHO05D004651 1.8e-146 524.2 688 46.1
CsaV3_5G017370 Cucumis sativus L. HOM05D006757 ORTHO05D004651 1.2e-145 521.5 615 48.3
arahy.Tifrunner.gnm1.ann1.CLVE3A Arachis hypogaea HOM05D006757 ORTHO05D004651 2.2e-144 517.3 686 46.5
TPR.G2437 Trifolium pratense HOM05D006757 ORTHO05D004651 2.2e-144 517.3 682 46.2
VMungo0720G1053 Vigna mungo HOM05D006757 ORTHO05D004651 3.8e-144 516.5 702 45.2
Lj6C727G2 Lonicera japonica HOM05D006757 ORTHO05D004651 1.4e-143 514.6 893 38.3
arahy.Tifrunner.gnm1.ann1.18R96V Arachis hypogaea HOM05D006757 ORTHO05D004651 3.2e-143 513.5 686 46.5
Lalb_Chr21g0306871 Lupinus albus HOM05D006757 ORTHO05D004651 3.2e-143 513.5 632 48.9
Rhsim09G0078600 Rhododendron simsii HOM05D006757 ORTHO05D004651 1.6e-142 511.1 925 37.5
Aqoxy3G04184 Aquilegia oxysepala HOM05D006757 ORTHO05D004651 2.1e-142 510.8 832 39.2
Glyma.10G280500 Glycine max HOM05D006757 ORTHO05D004651 7.9e-142 508.8 700 44.7
Medtr1g112280 Medicago truncatula HOM05D006757 ORTHO05D004651 1.9e-140 504.2 618 48.1
Phvul.007G020500 Phaseolus vulgaris HOM05D006757 ORTHO05D004651 1.6e-139 501.1 700 44.0
Psat6g231440 Pisum sativum HOM05D006757 ORTHO05D004651 2.1e-139 500.7 684 45.5
PSO063G3495 Papaver somniferum HOM05D006757 ORTHO05D004651 3.8e-136 490.0 697 43.2
EL10Ac6g15397 Beta vulgaris HOM05D006757 ORTHO05D004651 1.2e-134 485.0 613 44.9
Atru.chr11.1028 Acer truncatum HOM05D006757 ORTHO05D004651 3.1e-130 470.3 475 53.3
Eucgr.G02041 Eucalyptus grandis HOM05D006757 ORTHO05D004651 3.1e-130 470.3 565 48.5
AL2G34890 Arabidopsis lyrata HOM05D006757 ORTHO05D004651 3.4e-129 466.8 780 37.9
DCAR_030323 Daucus carota HOM05D006757 ORTHO05D004651 3.2e-127 460.3 691 39.9
Sp5g30140 Schrenkiella parvula HOM05D006757 ORTHO05D004651 1.2e-126 458.4 813 37.8
BcaC08g46956 Brassica carinata HOM05D006757 ORTHO05D004651 1.6e-126 458.0 780 38.2
Aa31LG4G5230 Aethionema arabicum HOM05D006757 ORTHO05D004651 1.5e-124 451.4 785 37.6
AT1G75010 Arabidopsis thaliana HOM05D006757 ORTHO05D004651 9.6e-124 448.7 862 36.8
Solyc01g007880.4 Solanum lycopersicum HOM05D006757 ORTHO05D004651 1.1e-122 445.3 668 41.3
AUR62017786 Chenopodium quinoa HOM05D006757 ORTHO05D004651 1.8e-122 444.5 676 41.4
Thhalv10018185m.g Eutrema salsugineum HOM05D006757 ORTHO05D004651 4.5e-121 439.9 774 37.9
Sopen01g003410 Solanum pennellii HOM05D006757 ORTHO05D004651 4.5e-121 439.9 664 41.0
vmacro10765 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 4.5e-121 439.9 745 37.6
Cpa.g.sc2.85 Carica papaya HOM05D006757 ORTHO05D004651 5.9e-121 439.5 479 52.4
MSTRG.2098 Avicennia marina HOM05D006757 ORTHO05D004651 1.3e-120 438.3 771 36.8
ATR0807G004 Amborella trichopoda HOM05D006757 ORTHO05D004651 1.7e-120 438.0 695 39.7
Migut.E00572 Erythranthe guttata HOM05D006757 ORTHO05D004651 3.8e-120 436.8 614 42.0
Carub.0002s2179 Capsella rubella HOM05D006757 ORTHO05D004651 5.5e-119 433.0 775 36.8
ECA233G5323 Erigeron canadensis HOM05D006757 ORTHO05D004651 3.6e-118 430.3 784 36.4
A07p40640 Brassica napus HOM05D006757 ORTHO05D004651 1.8e-117 427.9 836 35.4
BcaC08g46933 Brassica carinata HOM05D006757 ORTHO05D004651 5.1e-117 426.4 775 37.2
HanXRQChr12g0365871 Helianthus annuus HOM05D006757 ORTHO05D004651 1.9e-116 424.5 841 34.7
Nitab4.5_0004543g0020 Nicotiana tabacum HOM05D006757 ORTHO05D004651 2.5e-116 424.1 736 36.3
AUR62003477 Chenopodium quinoa HOM05D006757 ORTHO05D004651 4.3e-116 423.3 616 42.2
BolC6t39938H Brassica oleracea HOM05D006757 ORTHO05D004651 1.6e-115 421.4 776 37.0
BraA07t31608Z Brassica rapa HOM05D006757 ORTHO05D004651 1.6e-115 421.4 845 35.5
Cc11_g03340 Coffea canephora HOM05D006757 ORTHO05D004651 1.4e-114 418.3 731 36.8
CARHR068320 Cardamine hirsuta HOM05D006757 ORTHO05D004651 2.0e-113 414.5 685 39.4
Sed0027541 Sechium edule HOM05D006757 ORTHO05D004651 5.5e-111 406.4 463 48.8
SGA_v2.0_scaffold470G52072 Striga asiatica HOM05D006757 ORTHO05D004651 5.5e-111 406.4 634 39.9
C06p49010 Brassica napus HOM05D006757 ORTHO05D004651 2.3e-109 401.0 801 35.2
Lsat_1_v5_gn_8_33901 Lactuca sativa HOM05D006757 ORTHO05D004651 3.0e-109 400.6 699 39.8
THA.LOC104809054 Tarenaya hassleriana HOM05D006757 ORTHO05D004651 4.1e-106 390.2 777 35.8
BcaNung05827 Brassica carinata HOM05D006757 ORTHO05D004651 6.5e-104 382.9 777 37.3
Peaxi162Scf00097g00232 Petunia axillaris HOM05D006757 ORTHO05D004651 1.3e-88 332.0 684 33.2
HPP92_025367 Vanilla planifolia HOM05D006757 ORTHO05D004651 4.0e-85 320.5 617 36.0
Sc17g0005480 Simmondsia chinensis HOM05D006757 ORTHO05D004651 1.5e-84 318.5 641 34.8
Os09g0555600 Oryza sativa ssp. japonica HOM05D006757 ORTHO05D004651 8.3e-83 312.8 635 35.3
SalBow2G2705 Salvia bowleyana HOM05D006757 ORTHO05D004651 8.6e-80 302.8 629 32.8
CAN.G282.84 Capsicum annuum HOM05D006757 ORTHO05D004651 4.4e-76 290.4 606 33.5
Haze_10724 Corylus avellana HOM05D006757 ORTHO05D004651 2.1e-70 271.6 336 47.0
unitig_699.g19471 Utricularia gibba HOM05D006757 ORTHO05D004651 4.7e-70 270.4 782 29.4
Nitab4.5_0000944g0040 Nicotiana tabacum HOM05D006757 ORTHO05D004651 1.8e-66 258.5 254 51.6
Hma1.2p1_0933F.1_g238410 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 4.7e-62 243.8 517 35.4
Hma1.2p1_0933F.1_g238400 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 2.0e-60 238.4 350 44.3
BolC2t09256H Brassica oleracea HOM05D006757 ORTHO05D004651 2.3e-56 224.9 548 35.9
BcaC03g15537 Brassica carinata HOM05D006757 ORTHO05D004651 3.1e-53 214.5 513 37.6
Hund12802 Selenicereus undatus HOM05D006757 ORTHO05D004651 9.5e-47 193.0 306 38.6
Oeu001141.1 Olea europaea HOM05D006757 ORTHO05D004651 1.2e-46 192.6 263 44.9
CSS0036943 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 6.0e-41 173.7 175 53.1
Mapoly0058s0047 Marchantia polymorpha HOM05D006757 ORTHO05D004651 9.9e-36 156.4 659 26.6
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 8.7e-32 143.3 300 35.7
CSS0016054 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 7.3e-31 140.2 235 40.9
SalBow2G2121 Salvia bowleyana HOM05D006757 ORTHO05D004651 1.5e-28 132.5 188 45.7
SEGI_38740 Sequoiadendron giganteum HOM05D006757 ORTHO05D004651 9.3e-26 123.2 540 24.3
Actinidia37474 Actinidia chinensis HOM05D006757 ORTHO05D004651 3.7e-22 111.3 135 50.4
Zm00001eb320640 Zea mays HOM05D006757 ORTHO05D004651 1.7e-19 102.4 248 34.7
Ciclev10006110m.g Citrus clementina HOM05D006757 ORTHO05D004651 8.4e-19 100.1 159 42.1
CDE04G1248 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 1.1e-18 99.8 76 64.5
CDE04G0645 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 3.3e-15 88.2 258 31.8
Peaxi162Scf00097g02317 Petunia axillaris HOM05D006757 ORTHO05D004651 6.2e-14 84.0 87 50.6
CSS0046499 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 8.2e-14 83.6 83 84.3
C02p32190 Brassica napus HOM05D006757 ORTHO05D004651 1.8e-13 82.4 61 54.1
Glyma.20G109150 Glycine max HOM05D006757 ORTHO05D004651 2.4e-13 82.0 81 49.4
vmacro10766 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 4.6e-09 67.8 168 32.1
Cc11_g03350 Coffea canephora HOM05D006757 ORTHO05D004651 2.2e-06 58.9 63 49.2
Actinidia37475 Actinidia chinensis HOM05D006757 ORTHO05D004651 3.7e-06 58.2 67 85.1


User provided reference genes

Program Settings