Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.9e-101 372.5 187 100.0
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.2e-88 328.6 186 91.4
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 2.2e-84 315.8 191 86.4
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 5.3e-83 311.2 182 86.3
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 5.7e-77 291.2 185 81.1
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 5.3e-75 284.6 182 77.5
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 1.5e-74 283.1 191 74.3
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.6e-74 282.3 185 77.3
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 5.9e-74 281.2 183 77.6
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.3e-73 280.0 184 76.6
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 3.8e-73 278.5 183 77.6
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 8.5e-73 277.3 181 76.8
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.1e-72 276.9 182 78.6
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 3.2e-72 275.4 188 75.5
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 5.5e-72 274.6 182 77.5
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 2.7e-71 272.3 180 76.1
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 2.7e-71 272.3 185 75.7
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 3.6e-71 271.9 187 74.3
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 4.7e-71 271.6 183 74.3
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 4.7e-71 271.6 185 74.6
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 6.1e-71 271.2 164 82.3
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 7.9e-71 270.8 183 74.3
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.4e-70 270.0 177 75.7
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 1.8e-70 269.6 185 73.5
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 3.9e-70 268.5 176 76.7
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 6.7e-70 267.7 177 75.1
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 2.6e-69 265.8 188 71.3
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 4.4e-69 265.0 177 75.7
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 4.4e-69 265.0 178 74.2
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 7.4e-69 264.2 175 76.0
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.2e-68 262.7 185 74.6
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 2.2e-68 262.7 179 73.7
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 2.8e-68 262.3 171 77.2
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 2.8e-68 262.3 189 72.5
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 3.7e-68 261.9 188 71.3
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 3.7e-68 261.9 183 72.7
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 4.8e-68 261.5 176 73.9
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 8.2e-68 260.8 188 70.2
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 8.2e-68 260.8 185 71.4
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.1e-67 260.4 185 71.4
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.4e-67 260.0 185 70.3
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.8e-67 259.6 176 72.7
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 3.1e-67 258.8 183 71.6
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 5.3e-67 258.1 183 71.6
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 7.0e-67 257.7 176 72.2
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 1.0e-65 253.8 183 70.5
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.3e-65 253.4 179 70.9
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 5.0e-65 251.5 180 71.7
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.5e-65 251.1 185 70.3
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.1e-64 250.4 174 71.8
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.5e-64 250.0 187 67.9
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.4e-64 247.3 185 69.7
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.4e-64 247.3 185 69.7
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.6e-63 246.5 180 70.0
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.6e-63 245.4 185 68.6
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.0e-62 243.8 187 69.0
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 2.3e-62 242.7 173 69.4
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 3.0e-62 242.3 175 70.9
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 4.0e-62 241.9 211 60.7
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 4.0e-62 241.9 173 70.5
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.5e-61 237.7 178 67.4
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 2.2e-60 236.1 175 65.1
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 2.8e-60 235.7 244 54.5
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 6.3e-60 234.6 187 65.8
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-59 233.8 177 66.1
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.0e-57 227.3 183 62.8
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 5.0e-57 224.9 135 83.7
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-56 223.8 173 67.1
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.1e-56 223.8 172 68.0
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.9e-56 223.0 171 66.1
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 4.2e-56 221.9 175 62.3
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 9.4e-56 220.7 175 61.7
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.7e-55 218.4 181 64.1
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 1.4e-54 216.9 181 63.0
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 2.3e-54 216.1 172 65.1
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 3.0e-54 215.7 177 65.0
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.6e-53 212.6 134 77.6
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 3.4e-53 212.2 186 62.9
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 4.4e-53 211.8 135 77.0
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.3e-52 210.3 155 69.7
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.6e-50 203.4 133 74.4
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 3.5e-50 202.2 171 59.1
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.5e-50 202.2 176 58.0
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 4.5e-50 201.8 185 54.1
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 5.9e-50 201.4 171 59.1
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 5.0e-49 198.4 172 59.3
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.9e-48 196.4 155 67.1
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.2e-47 193.7 173 56.6
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 1.6e-47 193.4 175 57.7
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.6e-47 193.4 132 72.7
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.6e-47 192.2 181 55.8
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 6.1e-47 191.4 175 57.1
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 8.0e-47 191.0 175 57.7
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 1.8e-46 189.9 121 76.9
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 5.2e-46 188.3 175 56.6
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 8.8e-46 187.6 175 57.1
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 2.0e-45 186.4 176 57.4
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 2.6e-45 186.0 111 82.0
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 5.7e-45 184.9 175 57.1
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.7e-44 183.3 132 71.2
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 1.7e-44 183.3 169 55.6
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 4.9e-44 181.8 175 54.9
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 4.9e-44 181.8 175 54.9
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 4.9e-44 181.8 175 55.4
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 6.3e-44 181.4 165 50.9
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 6.3e-44 181.4 190 53.7
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.8e-43 179.9 135 68.9
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 2.4e-43 179.5 176 55.7
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.2e-42 177.2 131 69.5
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 8.6e-41 171.0 165 55.8
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 2.5e-40 169.5 165 55.2
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.5e-37 160.2 136 60.3
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 9.8e-37 157.5 132 59.1
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 2.2e-36 156.4 120 65.0
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 8.3e-36 154.5 130 61.5
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.8e-35 153.3 158 55.1
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.8e-35 153.3 185 45.9
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 5.9e-34 148.3 179 46.4
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.0e-33 147.5 170 47.1
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 3.9e-33 145.6 192 40.6
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 5.0e-33 145.2 118 62.7
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 8.6e-33 144.4 172 45.3
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.6e-33 144.4 120 63.3
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.3e-32 142.1 140 54.3
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 4.7e-31 138.7 181 41.4
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.5e-29 133.7 174 42.0
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 5.8e-29 131.7 174 42.0
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 7.5e-29 131.3 174 42.0
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.3e-28 130.6 175 42.9
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 3.7e-28 129.0 177 44.6
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 6.4e-28 128.3 182 39.6
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 5.4e-27 125.2 132 56.8
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 4.6e-26 122.1 78 78.2
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 6.0e-26 121.7 178 38.2
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 3.1e-22 109.4 166 39.2
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 5.8e-21 105.1 129 44.2
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 4.9e-20 102.1 90 61.1
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 2.1e-18 96.7 62 77.4
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 4.6e-18 95.5 55 83.6
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 6.0e-18 95.1 55 81.8
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 7.8e-18 94.7 172 35.5
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 3.9e-17 92.4 74 66.2
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 5.1e-17 92.0 53 83.0
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 6.6e-17 91.7 55 80.0
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.2e-15 87.4 95 50.5
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-14 84.3 53 75.5
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 4.9e-12 75.5 87 49.4
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 8.4e-12 74.7 49 71.4
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 3.2e-11 72.8 41 82.9
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 1.6e-07 60.5 64 45.3


User provided reference genes

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