Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 0.0e+00 1498.4 757 100.0
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 0.0e+00 1332.4 700 95.9
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 0.0e+00 1171.4 728 80.9
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 0.0e+00 1106.7 704 78.8
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 0.0e+00 1095.5 702 79.1
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 0.0e+00 1085.1 703 77.4
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 0.0e+00 1083.2 710 77.3
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.5e-309 1065.8 698 78.1
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 2.1e-308 1062.0 704 75.1
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.4e-306 1054.7 705 75.6
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 5.9e-306 1053.9 702 76.4
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.2e-303 1046.2 698 76.2
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.1e-303 1045.4 682 78.4
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 4.6e-303 1044.3 701 76.6
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.0e-302 1043.1 701 75.0
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.0e-302 1043.1 704 75.4
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 3.0e-302 1041.6 701 75.5
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.7e-302 1040.4 705 74.8
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 7.4e-301 1036.9 705 75.3
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 8.2e-300 1033.5 715 73.1
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 2.4e-299 1031.9 726 73.3
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 1.5e-298 1029.2 707 73.1
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.0e-298 1028.9 719 73.0
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.6e-298 1028.5 707 73.0
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 2.6e-298 1028.5 732 71.9
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 7.7e-298 1026.9 708 73.2
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.2e-297 1025.4 707 72.4
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 8.5e-297 1023.5 705 74.6
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.5e-296 1020.8 711 72.9
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 9.4e-296 1020.0 702 73.4
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.7e-295 1018.5 719 72.5
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 4.6e-295 1017.7 730 71.8
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.0e-294 1016.5 738 71.5
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 3.9e-294 1014.6 699 72.4
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 5.1e-294 1014.2 700 72.6
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 6.3e-292 1007.3 703 73.7
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 3.1e-291 1005.0 704 71.7
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 1.5e-290 1002.7 696 71.7
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 3.4e-290 1001.5 783 67.0
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 4.5e-290 1001.1 702 72.2
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 4.5e-290 1001.1 702 72.1
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.0e-289 1000.0 705 71.3
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 3.8e-289 998.0 705 71.2
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 8.5e-289 996.9 702 71.9
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.4e-288 996.1 710 71.1
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 4.2e-288 994.6 703 71.7
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.8e-286 989.2 718 71.2
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.3e-286 988.8 704 71.0
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 2.3e-286 988.8 702 71.4
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 2.6e-285 985.3 705 70.1
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 5.7e-285 984.2 705 70.9
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 9.7e-285 983.4 707 70.3
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 2.2e-284 982.2 707 70.3
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 2.2e-284 982.2 707 69.6
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 2.8e-284 981.9 703 72.0
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 6.3e-284 980.7 705 71.6
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 5.3e-283 977.6 710 70.1
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.2e-282 976.5 707 69.9
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 2.0e-282 975.7 706 70.3
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.6e-282 975.3 707 69.9
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 4.5e-282 974.5 719 69.0
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 2.9e-281 971.8 704 69.9
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 3.2e-280 968.4 653 76.0
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 4.2e-280 968.0 719 68.8
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 5.5e-280 967.6 699 70.4
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.2e-279 966.5 702 69.2
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.6e-279 966.1 643 77.1
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 6.1e-279 964.1 703 70.6
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.0e-278 963.4 707 69.7
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 4.0e-278 961.4 702 69.2
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 8.8e-278 960.3 702 68.5
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.7e-276 956.1 702 68.7
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 4.8e-276 954.5 702 68.2
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.1e-275 953.4 702 69.7
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.4e-275 953.0 677 72.5
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 3.1e-275 951.8 701 68.6
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 9.1e-275 950.3 699 68.2
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 9.1e-275 950.3 701 69.0
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 1.6e-274 949.5 716 68.6
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 2.0e-274 949.1 701 68.5
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.0e-273 946.8 724 67.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.0e-273 946.8 743 66.1
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.3e-273 946.4 702 68.1
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 1.7e-273 946.0 699 68.2
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 2.2e-273 945.7 719 66.6
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 8.5e-273 943.7 709 68.3
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 5.5e-272 941.0 705 67.2
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.0e-270 936.8 682 69.8
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.8e-270 936.0 706 68.8
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 5.2e-270 934.5 706 68.6
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 2.0e-269 932.6 700 67.6
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 7.5e-269 930.6 731 65.4
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.6e-266 922.9 713 65.9
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.3e-265 919.8 702 66.5
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.5e-264 915.6 708 65.8
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 5.2e-262 907.9 703 66.3
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.5e-261 906.4 704 65.8
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.3e-260 903.3 717 66.4
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 4.9e-260 901.4 706 64.7
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 6.3e-260 901.0 704 66.3
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 4.1e-259 898.3 721 66.2
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 2.0e-258 896.0 699 65.5
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 2.3e-257 892.5 675 68.0
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 3.8e-257 891.7 700 65.4
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.1e-256 890.2 710 63.5
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.9e-256 889.4 639 70.6
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.1e-255 885.9 708 65.4
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 8.9e-254 880.6 709 64.5
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.7e-249 866.3 698 66.0
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.1e-248 863.6 704 61.8
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.9e-243 846.3 706 61.6
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 4.7e-239 831.6 707 62.1
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 1.1e-238 830.5 641 68.8
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 8.9e-238 827.4 699 61.1
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.2e-237 827.0 616 70.5
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 5.4e-235 818.1 705 62.4
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 7.1e-235 817.8 708 61.6
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.1e-232 810.4 549 76.0
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 1.4e-222 776.9 707 57.9
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 7.1e-219 764.6 650 63.5
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.3e-216 755.7 621 66.7
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.3e-215 753.8 556 71.6
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 6.9e-214 748.0 707 57.6
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.8e-206 723.4 569 68.0
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 6.9e-198 694.9 576 63.5
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.3e-193 680.6 713 52.2
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 5.0e-188 662.1 649 54.7
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 5.5e-187 658.7 492 68.9
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.3e-180 637.5 697 51.8
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.8e-169 600.5 707 47.1
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 5.9e-149 532.3 589 52.1
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 1.9e-147 527.3 451 65.2
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 4.7e-138 496.1 893 38.2
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.9e-137 491.9 354 70.3
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.0e-105 386.7 271 70.1
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.4e-103 379.4 266 71.8
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 2.5e-99 367.5 367 54.5
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 2.8e-98 364.0 322 59.3
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 2.1e-93 347.8 564 42.9
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.3e-74 285.4 513 35.9
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.2e-64 252.3 289 49.1
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 7.7e-48 196.4 303 41.6
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 4.7e-45 187.2 190 54.2
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 1.0e-44 186.0 323 39.6
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 6.8e-44 183.3 126 66.7
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.5e-43 182.2 122 76.2
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.5e-38 165.6 136 66.9
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 1.2e-37 162.5 177 50.8
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 7.7e-32 143.3 124 56.5
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.3e-31 142.5 139 52.5
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 5.0e-31 140.6 179 46.9
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 4.1e-25 120.9 323 31.9
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.2e-19 102.8 128 50.0
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 2.2e-18 98.6 88 59.1
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 3.5e-16 91.3 83 53.0
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 1.5e-14 85.9 58 72.4
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 1.4e-12 79.3 55 61.8
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-10 72.8 84 44.0
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-10 72.8 84 44.0
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.7e-10 72.4 64 53.1
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.9e-10 70.9 49 71.4
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.6e-08 64.3 37 83.8


User provided reference genes

Program Settings