Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 1.9e-206 722.2 360 100.0
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 2.1e-189 665.6 360 93.3
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 8.0e-120 434.5 371 61.5
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 5.7e-118 428.3 335 63.6
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 5.4e-116 421.8 263 81.4
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 2.5e-113 412.9 336 62.2
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 4.2e-113 412.1 353 60.3
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 3.6e-112 409.1 360 60.3
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 9.8e-110 401.0 362 58.3
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 2.4e-108 396.4 357 59.7
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 2.0e-107 393.3 354 59.9
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 5.9e-107 391.7 353 59.5
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 7.8e-107 391.3 347 60.5
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 1.3e-106 390.6 340 59.7
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.5e-105 386.3 354 59.6
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 1.2e-104 384.0 347 59.9
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.6e-104 383.6 353 59.5
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 2.1e-104 383.3 359 57.9
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 6.1e-104 381.7 344 59.6
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 4.0e-103 379.0 342 58.5
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 1.2e-102 377.5 335 57.3
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.8e-102 375.2 368 58.2
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.8e-102 375.2 368 58.2
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.8e-102 375.2 368 58.2
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 1.7e-101 373.6 367 56.7
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 3.7e-101 372.5 372 57.5
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 9.2e-100 367.9 367 56.1
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 3.9e-98 362.5 366 54.4
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 3.9e-98 362.5 341 56.3
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 3.3e-97 359.4 342 56.7
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 1.1e-95 354.4 358 54.7
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 1.1e-95 354.4 362 52.8
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 2.3e-95 353.2 354 54.5
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 1.5e-94 350.5 368 53.0
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 1.7e-93 347.1 336 52.4
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 9.2e-92 341.3 354 49.7
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 2.1e-91 340.1 325 52.9
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 2.7e-91 339.7 347 52.2
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 1.7e-90 337.0 351 50.1
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 1.7e-90 337.0 323 53.9
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 8.6e-90 334.7 343 54.5
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.9e-89 333.6 352 50.3
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 1.9e-89 333.6 321 53.9
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 5.6e-89 332.0 354 49.4
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 1.6e-88 330.5 359 49.0
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 3.6e-88 329.3 343 51.9
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 8.1e-88 328.2 352 51.4
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 1.8e-87 327.0 346 51.4
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 1.8e-87 327.0 345 51.3
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 2.3e-87 326.6 355 49.3
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 4.0e-87 325.9 356 48.9
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 5.2e-87 325.5 339 51.9
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 8.9e-87 324.7 326 54.6
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 8.9e-87 324.7 339 51.6
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 1.2e-86 324.3 325 54.8
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 7.6e-86 321.6 354 49.4
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 8.4e-85 318.2 357 47.6
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 1.1e-84 317.8 342 51.8
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 4.1e-84 315.8 359 48.7
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 5.4e-84 315.5 340 50.9
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 5.4e-84 315.5 354 50.3
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 7.1e-84 315.1 335 51.0
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 1.6e-83 313.9 325 50.8
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 5.1e-82 308.9 344 47.7
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 1.1e-81 307.8 351 49.0
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 1.1e-81 307.8 351 49.0
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 1.1e-81 307.8 351 49.0
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 3.3e-81 306.2 342 50.3
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 1.2e-80 304.3 304 54.3
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 2.1e-80 303.5 331 48.9
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 2.8e-80 303.1 340 49.4
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 8.1e-80 301.6 345 49.6
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 1.1e-79 301.2 363 47.9
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 1.4e-79 300.8 333 49.8
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 4.0e-79 299.3 344 48.5
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 4.0e-79 299.3 355 47.6
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 2.2e-77 293.5 340 46.8
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 2.9e-77 293.1 326 48.8
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 3.8e-77 292.7 340 46.8
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 3.2e-76 289.7 345 47.5
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 4.2e-76 289.3 299 51.2
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 7.1e-76 288.5 333 45.9
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 9.3e-76 288.1 354 45.5
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 1.6e-75 287.3 358 46.1
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 3.0e-74 283.1 343 44.9
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 1.9e-73 280.4 356 45.5
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 3.3e-73 279.6 349 46.4
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 2.1e-72 276.9 332 44.9
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 9.0e-71 271.6 313 50.2
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 3.4e-70 269.6 324 46.3
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 2.9e-69 266.5 340 45.9
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 2.1e-67 260.4 328 47.9
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 3.1e-63 246.5 335 46.3
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 1.2e-62 244.6 337 42.1
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 1.2e-62 244.6 328 42.4
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 1.2e-62 244.6 332 44.0
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 3.4e-62 243.0 317 46.4
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 2.2e-61 240.4 254 49.6
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 9.3e-60 235.0 228 52.2
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 3.3e-57 226.5 274 45.3
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 5.8e-54 215.7 325 37.5
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 5.0e-45 186.0 321 35.8
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 6.5e-45 185.7 327 35.8
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 5.1e-42 176.0 240 44.2
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 2.5e-41 173.7 306 34.3
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 3.3e-41 173.3 316 35.4
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 3.7e-40 169.9 203 43.8
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 6.3e-40 169.1 134 60.4
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 1.4e-39 167.9 193 45.6
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 4.1e-39 166.4 157 49.7
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 1.2e-38 164.9 131 58.8
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 2.6e-38 163.7 350 33.7
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 3.4e-38 163.3 183 48.1
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 7.9e-35 152.1 320 33.4
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 2.4e-31 140.6 268 33.2
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 3.4e-30 136.7 103 60.2
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 2.9e-29 133.7 207 44.0
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 3.9e-26 123.2 95 58.9
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 3.1e-23 113.6 198 34.8
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 7.0e-23 112.5 119 46.2
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 7.0e-23 112.5 119 46.2
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 2.0e-22 110.9 152 42.1
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 1.0e-21 108.6 107 50.5
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 1.0e-21 108.6 107 50.5
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 1.3e-21 108.2 108 50.0
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 1.3e-21 108.2 108 50.0
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 6.5e-21 105.9 107 49.5
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 1.1e-20 105.1 108 49.1
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 1.9e-20 104.4 92 54.3
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 1.2e-19 101.7 109 49.5
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 3.6e-19 100.1 156 34.6
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 9.7e-17 92.0 97 45.4
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 3.7e-16 90.1 71 62.0
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 2.6e-09 67.4 119 34.5
Haze_20405 Corylus avellana HOM05D005574 ORTHO05D007102 3.7e-08 63.5 68 48.5


User provided reference genes

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