Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 1.2e-43 179.5 92 100.0
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 2.3e-39 165.2 92 91.3
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 5.7e-38 160.6 92 89.1
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 8.3e-21 103.6 90 62.2
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 1.6e-19 99.4 89 61.8
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 4.5e-19 97.8 90 61.1
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 2.2e-18 95.5 90 58.9
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 6.5e-18 94.0 90 58.9
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.1e-17 93.2 83 59.0
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 1.5e-17 92.8 84 57.1
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 1.9e-17 92.4 86 58.1
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 2.5e-17 92.0 89 57.3
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 1.2e-16 89.7 92 52.2
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 1.6e-16 89.4 85 57.6
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 1.6e-16 89.4 86 55.8
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 3.6e-16 88.2 86 53.5
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 8.0e-16 87.0 82 61.0
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 8.0e-16 87.0 82 61.0
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 8.0e-16 87.0 82 61.0
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 8.0e-16 87.0 82 61.0
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 8.0e-16 87.0 82 61.0
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 8.0e-16 87.0 82 61.0
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 8.0e-16 87.0 82 61.0
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 8.0e-16 87.0 82 61.0
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 1.0e-15 86.7 87 56.3
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 1.4e-15 86.3 85 52.9
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.3e-15 85.5 83 55.4
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 3.0e-15 85.1 87 55.2
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 3.0e-15 85.1 87 55.2
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 4.0e-15 84.7 85 57.6
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.2e-14 83.2 83 54.2
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 7.5e-14 80.5 82 58.5
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 7.5e-14 80.5 84 48.8
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 7.5e-14 80.5 90 48.9
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 9.8e-14 80.1 83 53.0
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.3e-13 79.7 83 50.6
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.2e-13 79.0 89 51.7
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 4.9e-13 77.8 86 51.2
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 1.4e-12 76.3 86 50.0
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 1.4e-12 76.3 108 44.4
Sed0006099 Sechium edule HOM05D005842 ORTHO05D007077 2.4e-12 75.5 88 46.6
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 4.1e-12 74.7 108 42.6
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 7.0e-12 73.9 83 48.2
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 1.2e-11 73.2 83 49.4
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 1.6e-11 72.8 89 47.2
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 2.7e-11 72.0 107 41.1
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 2.7e-11 72.0 107 41.1
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 2.7e-11 72.0 107 41.1
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 3.5e-11 71.6 89 46.1
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 4.5e-11 71.2 89 48.3
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 5.9e-11 70.9 89 47.2
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 7.8e-11 70.5 82 51.2
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 1.0e-10 70.1 108 41.7
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 1.0e-10 70.1 108 41.7
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 1.3e-10 69.7 82 48.8
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 2.3e-10 68.9 89 44.9
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 2.3e-10 68.9 92 47.8
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 2.3e-10 68.9 99 46.5
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 2.3e-10 68.9 84 46.4
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 2.3e-10 68.9 84 46.4
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 2.9e-10 68.6 93 48.4
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 3.8e-10 68.2 89 44.9
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 5.0e-10 67.8 84 47.6
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 5.0e-10 67.8 84 47.6
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 5.0e-10 67.8 74 48.6
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 6.6e-10 67.4 89 43.8
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 6.6e-10 67.4 93 47.3
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 8.6e-10 67.0 84 45.2
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 8.6e-10 67.0 93 48.4
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 1.1e-09 66.6 84 46.4
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.9e-09 65.9 89 46.1
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 2.5e-09 65.5 92 46.7
Aa31LG9G4090 Aethionema arabicum HOM05D005842 ORTHO05D007077 4.3e-09 64.7 119 37.8
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 4.3e-09 64.7 90 45.6
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 7.3e-09 63.9 96 41.7
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 7.3e-09 63.9 65 53.8
Lalb_Chr03g0036861 Lupinus albus HOM05D005842 ORTHO05D007077 9.5e-09 63.5 61 55.7
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 9.5e-09 63.5 85 43.5
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 2.1e-08 62.4 59 59.3
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 2.1e-08 62.4 75 46.7
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 2.1e-08 62.4 74 45.9
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 2.1e-08 62.4 107 38.3
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 2.1e-08 62.4 58 58.6
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 2.1e-08 62.4 90 41.1
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 2.1e-08 62.4 90 41.1
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 4.7e-08 61.2 75 45.3
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 4.7e-08 61.2 92 41.3
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 4.7e-08 61.2 92 41.3
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 4.7e-08 61.2 92 41.3
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 4.7e-08 61.2 92 41.3
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 6.1e-08 60.8 73 45.2
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 8.0e-08 60.5 85 41.2
Psat6g108960 Pisum sativum HOM05D005842 ORTHO05D007077 1.0e-07 60.1 137 30.7
Medtr1g045980 Medicago truncatula HOM05D005842 ORTHO05D007077 1.4e-07 59.7 125 33.6
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 1.4e-07 59.7 89 41.6
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 1.8e-07 59.3 83 43.4
BcaB04g17686 Brassica carinata HOM05D005842 ORTHO05D007077 2.3e-07 58.9 107 36.4
BcaC07g37350 Brassica carinata HOM05D005842 ORTHO05D007077 8.9e-07 57.0 107 35.5
ATR0787G056 Amborella trichopoda HOM05D005842 ORTHO05D007077 1.2e-06 56.6 90 38.9
CANSAT78G1061 Cannabis sativa HOM05D005842 ORTHO05D007077 1.5e-06 56.2 104 38.5
A08p06740 Brassica napus HOM05D005842 ORTHO05D007077 3.4e-06 55.1 108 36.1
BolC8t47646H Brassica oleracea HOM05D005842 ORTHO05D007077 3.4e-06 55.1 108 36.1
BraA08t32692Z Brassica rapa HOM05D005842 ORTHO05D007077 3.4e-06 55.1 108 36.1
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 3.4e-06 55.1 107 35.5
HPP92_007287 Vanilla planifolia HOM05D005842 ORTHO05D007077 4.4e-06 54.7 102 40.2
Solyc12g097050.2 Solanum lycopersicum HOM05D005842 ORTHO05D007077 5.7e-06 54.3 87 36.8
BcaC02g09416 Brassica carinata HOM05D005842 ORTHO05D007077 7.5e-06 53.9 93 37.6
CANSAT78G1849 Cannabis sativa HOM05D005842 ORTHO05D007077 7.5e-06 53.9 112 36.6
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 7.5e-06 53.9 111 36.9
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 7.5e-06 53.9 43 58.1
Sopen12g032850 Solanum pennellii HOM05D005842 ORTHO05D007077 7.5e-06 53.9 78 38.5
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 9.8e-06 53.5 107 33.6
C04p42360 Brassica napus HOM05D005842 ORTHO05D007077 9.8e-06 53.5 102 37.3
HPP92_007288 Vanilla planifolia HOM05D005842 ORTHO05D007077 9.8e-06 53.5 99 38.4


User provided reference genes

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