Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 0.0e+00 1107.0 596 100.0
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 5.0e-268 927.5 596 83.1
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 6.7e-265 917.1 596 79.2
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 3.6e-258 894.8 596 77.0
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 3.6e-258 894.8 596 76.8
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.8e-257 892.5 596 76.5
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 2.2e-255 885.6 612 74.8
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 2.8e-255 885.2 596 76.3
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 1.2e-250 869.8 615 73.0
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 1.6e-250 869.4 596 74.3
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 8.8e-249 863.6 641 70.2
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.5e-248 862.8 596 72.5
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 2.0e-248 862.4 596 74.0
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.7e-247 859.4 593 72.3
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 7.0e-246 854.0 607 72.3
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 1.2e-245 853.2 625 70.9
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 3.5e-245 851.7 596 73.3
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 2.3e-244 849.0 600 72.5
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 3.8e-244 848.2 605 72.4
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 8.6e-244 847.0 597 72.7
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 7.2e-243 844.0 602 71.6
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.6e-242 842.8 596 71.1
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 1.8e-241 839.3 596 71.1
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 2.3e-241 839.0 596 71.1
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 3.0e-241 838.6 622 70.1
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 5.2e-241 837.8 596 70.8
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 6.8e-241 837.4 596 72.7
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 6.8e-241 837.4 602 70.8
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.0e-240 835.9 577 81.8
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 5.7e-240 834.3 596 70.8
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 7.5e-240 833.9 596 70.6
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 9.8e-240 833.6 622 68.5
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 2.8e-239 832.0 596 71.1
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 3.7e-239 831.6 596 70.8
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 8.3e-239 830.5 596 71.5
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 1.8e-238 829.3 596 70.8
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 3.1e-238 828.6 593 71.5
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 3.1e-238 828.6 672 65.8
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 7.0e-238 827.4 596 70.5
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 1.2e-237 826.6 596 72.0
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.0e-237 825.9 596 72.0
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 3.5e-237 825.1 596 70.8
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 7.8e-237 823.9 572 72.4
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 3.8e-236 821.6 596 70.6
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 8.6e-236 820.5 618 68.8
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 8.6e-236 820.5 592 70.6
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 2.5e-235 818.9 593 71.2
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 4.3e-235 818.1 596 69.6
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 2.1e-234 815.8 529 76.9
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 2.8e-234 815.5 597 70.0
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 3.6e-234 815.1 600 71.2
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 6.8e-233 810.8 595 69.9
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.6e-232 808.9 597 70.0
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 2.2e-231 805.8 593 69.1
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 8.3e-231 803.9 644 65.8
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 3.2e-230 802.0 596 70.3
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 3.2e-230 802.0 582 71.5
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 5.4e-230 801.2 526 75.3
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 7.0e-230 800.8 526 75.7
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 7.0e-230 800.8 596 67.4
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 9.2e-230 800.4 594 69.0
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 3.5e-229 798.5 526 75.3
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 1.0e-228 797.0 526 75.5
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 1.3e-228 796.6 593 68.5
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 1.5e-227 793.1 623 67.3
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 4.3e-227 791.6 595 68.9
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.8e-225 786.2 634 65.5
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 7.5e-224 780.8 593 68.0
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 2.1e-221 772.7 523 73.8
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 2.1e-221 772.7 596 67.3
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 2.7e-221 772.3 529 72.0
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 4.6e-221 771.5 502 75.9
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 6.0e-221 771.2 522 73.2
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 5.1e-220 768.1 602 66.6
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 6.6e-220 767.7 535 71.2
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 8.6e-220 767.3 519 73.4
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 2.8e-218 762.3 583 70.7
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 6.2e-218 761.1 654 61.9
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.9e-215 752.3 567 69.0
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 3.2e-214 748.8 509 75.2
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 2.7e-213 745.7 596 66.8
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 1.4e-209 733.4 642 61.1
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 3.1e-209 732.3 585 65.1
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 2.4e-206 722.6 483 74.7
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 2.4e-206 722.6 490 71.6
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 2.1e-205 719.5 593 64.2
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 8.7e-204 714.1 490 73.3
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 1.7e-199 699.9 491 71.5
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 4.2e-198 695.3 634 59.6
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 5.1e-196 688.3 490 71.6
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 7.3e-195 684.5 480 71.7
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 5.3e-193 678.3 524 63.2
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.2e-191 672.9 531 63.5
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.4e-184 649.0 424 73.1
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 5.8e-184 648.3 617 57.7
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 2.9e-183 646.0 603 58.2
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.9e-182 643.3 526 62.0
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.6e-181 640.2 545 59.4
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 1.9e-179 633.3 525 58.5
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 5.8e-176 621.7 475 66.5
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 1.3e-175 620.5 529 62.9
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 5.3e-169 598.6 463 64.6
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 2.7e-165 586.3 596 54.9
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.8e-161 573.5 380 78.7
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 4.2e-158 562.4 495 63.0
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 4.8e-154 548.9 389 74.0
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.6e-149 533.9 526 52.3
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 3.3e-147 526.2 530 52.5
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 3.3e-147 526.2 362 75.1
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 4.1e-137 492.7 294 84.7
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 2.7e-136 490.0 359 69.6
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 1.9e-126 457.2 518 44.0
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 7.8e-120 435.3 271 81.2
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 6.8e-108 395.6 483 47.8
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.5e-107 394.4 426 54.7
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 8.6e-103 378.6 227 83.3
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 1.9e-102 377.5 299 65.6
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 4.4e-91 339.7 206 83.5
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 7.8e-88 328.9 212 75.0
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 7.1e-81 305.8 188 81.9
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 3.3e-78 297.0 212 68.4
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 4.8e-77 293.1 212 65.1
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.1e-76 292.0 212 66.5
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 2.5e-70 270.8 516 33.5
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 4.6e-64 250.0 137 78.8
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 6.7e-55 219.5 139 78.4
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 9.0e-52 209.1 224 52.7
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 1.2e-51 208.8 181 58.6
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 1.8e-47 194.9 392 33.2
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 3.6e-40 170.6 89 85.4
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 3.6e-40 170.6 89 85.4
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.0e-39 169.1 136 64.7
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 1.1e-38 165.6 351 32.8
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 8.5e-34 149.4 146 56.8
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 8.8e-31 139.4 123 61.8
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 4.4e-30 137.1 136 58.1
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 9.4e-25 119.4 69 78.3
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 1.4e-23 115.5 190 41.1
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 4.4e-22 110.5 69 81.2
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 9.1e-20 102.8 180 38.3
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 2.0e-19 101.7 52 90.4
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 3.5e-19 100.9 77 61.0
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 1.3e-18 99.0 121 51.2
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 2.2e-18 98.2 66 72.7
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 2.9e-18 97.8 119 45.4
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 7.2e-17 93.2 57 78.9
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.4e-15 89.0 104 50.0
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 2.3e-15 88.2 145 41.4
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 9.1e-12 76.3 61 63.9
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 1.6e-11 75.5 57 68.4
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 2.5e-09 68.2 46 73.9
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 5.6e-09 67.0 72 50.0
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.6e-08 65.5 94 40.4
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 1.8e-07 62.0 51 58.8
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 2.0e-06 58.5 43 62.8
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 7.5e-06 56.6 36 69.4


User provided reference genes

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