Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.8e-58 229.2 128 100.0
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 3.5e-54 214.9 128 89.8
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.8e-53 212.6 128 83.6
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 3.3e-52 208.4 128 82.0
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 6.2e-51 204.1 128 81.2
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 8.2e-51 203.8 127 81.1
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.8e-50 202.6 132 78.0
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 5.3e-50 201.1 128 82.8
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 9.0e-50 200.3 128 78.1
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 2.6e-49 198.7 128 84.4
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 3.4e-49 198.4 128 78.9
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 5.8e-49 197.6 128 78.9
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.7e-48 196.1 128 78.9
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 2.9e-48 195.3 128 77.3
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 1.1e-47 193.4 128 76.6
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 1.4e-47 193.0 127 76.4
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 5.5e-47 191.0 128 74.2
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 7.1e-47 190.7 130 75.4
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 7.1e-47 190.7 128 77.3
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 9.3e-47 190.3 128 75.0
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 9.3e-47 190.3 128 75.0
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 1.2e-46 189.9 128 74.2
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.7e-46 188.7 129 76.0
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 1.3e-45 186.4 129 76.0
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 3.0e-45 185.3 128 73.4
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 8.7e-45 183.7 130 75.4
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.5e-44 182.2 128 74.2
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.5e-44 182.2 123 74.0
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 3.3e-44 181.8 131 73.3
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 4.3e-44 181.4 135 74.1
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 4.3e-44 181.4 132 72.0
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 9.7e-44 180.3 136 73.5
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.3e-43 179.9 135 73.3
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.3e-43 179.9 136 73.5
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.3e-43 179.9 135 72.6
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.6e-43 179.5 128 67.2
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.8e-43 178.7 128 74.2
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 2.8e-43 178.7 128 73.4
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.8e-43 178.7 129 72.9
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 3.7e-43 178.3 135 73.3
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 4.8e-43 177.9 131 70.2
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 4.8e-43 177.9 131 70.2
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 6.3e-43 177.6 128 69.5
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 6.3e-43 177.6 129 71.3
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 6.3e-43 177.6 129 71.3
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.4e-42 176.4 128 68.0
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.4e-42 176.4 128 73.4
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 1.4e-42 176.4 130 73.8
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 1.4e-42 176.4 130 73.8
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.8e-42 176.0 134 70.9
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.8e-42 176.0 131 72.5
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.8e-42 176.0 128 71.9
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 3.1e-42 175.3 131 71.0
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.1e-42 174.9 133 70.7
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.3e-42 174.5 128 70.3
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.3e-42 174.5 128 70.3
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 5.3e-42 174.5 128 70.3
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 5.3e-42 174.5 133 69.9
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 6.9e-42 174.1 130 70.8
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 1.2e-41 173.3 132 72.0
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.5e-41 172.9 129 68.2
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 2.0e-41 172.6 136 69.1
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.0e-41 172.6 129 70.5
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 3.4e-41 171.8 130 73.8
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 4.5e-41 171.4 130 70.8
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 4.5e-41 171.4 103 83.5
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 5.9e-41 171.0 128 71.1
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 7.7e-41 170.6 131 68.7
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.3e-40 169.9 132 72.7
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.7e-40 169.5 134 68.7
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.7e-40 169.5 134 68.7
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 2.9e-40 168.7 130 70.0
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.9e-40 168.7 127 71.7
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 8.5e-40 167.2 128 68.0
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 8.5e-40 167.2 128 70.3
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 8.5e-40 167.2 134 68.7
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 8.5e-40 167.2 104 81.7
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.4e-39 166.4 133 66.9
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.4e-39 166.4 133 66.9
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 2.5e-39 165.6 128 71.9
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 4.2e-39 164.9 133 66.9
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 4.2e-39 164.9 133 66.9
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 4.2e-39 164.9 134 67.9
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.2e-39 164.9 128 67.2
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 5.5e-39 164.5 132 67.4
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 7.2e-39 164.1 130 70.0
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 7.2e-39 164.1 129 69.0
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 9.4e-39 163.7 132 66.7
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 9.4e-39 163.7 130 69.2
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 1.2e-38 163.3 132 68.2
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 1.2e-38 163.3 132 68.2
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.2e-38 163.3 131 69.5
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.2e-38 163.3 96 81.2
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.2e-38 163.3 128 65.6
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 2.1e-38 162.5 132 68.2
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 6.1e-38 161.0 128 66.4
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 6.1e-38 161.0 132 67.4
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 6.1e-38 161.0 96 83.3
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 7.9e-38 160.6 129 65.1
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.0e-37 160.2 127 66.9
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.0e-37 160.2 127 66.9
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 1.8e-37 159.5 132 64.4
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 1.8e-37 159.5 132 64.4
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 1.8e-37 159.5 132 64.4
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.8e-37 159.5 132 68.2
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 1.8e-37 159.5 131 67.2
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.3e-37 159.1 132 69.7
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 2.3e-37 159.1 132 69.7
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.3e-37 159.1 128 64.8
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.3e-37 159.1 132 65.2
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 3.9e-37 158.3 102 77.5
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 3.9e-37 158.3 124 67.7
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 3.9e-37 158.3 124 67.7
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 6.7e-37 157.5 133 64.7
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 8.8e-37 157.1 127 65.4
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 8.8e-37 157.1 125 66.4
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.1e-36 156.8 130 66.2
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 3.3e-36 155.2 129 67.4
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 4.3e-36 154.8 103 76.7
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 7.4e-36 154.1 130 65.4
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 1.7e-35 152.9 130 63.8
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 4.8e-35 151.4 105 75.2
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 6.3e-35 151.0 129 61.2
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.1e-34 150.2 105 75.2
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.4e-34 149.1 101 73.3
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.2e-33 146.7 103 68.0
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 7.7e-33 144.1 126 60.3
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.7e-32 142.9 87 80.5
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 3.8e-32 141.7 83 83.1
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 2.5e-31 139.0 94 76.6
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 1.2e-30 136.7 87 77.0
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 6.1e-30 134.4 76 84.2
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 8.8e-29 130.6 87 77.0
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 1.1e-28 130.2 128 58.6
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 1.5e-28 129.8 86 74.4
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.5e-28 129.8 89 74.2
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 1.7e-27 126.3 101 62.4
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.4e-26 122.5 94 67.0
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.1e-26 121.7 93 62.4
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.9e-25 117.9 69 85.5
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 7.7e-25 117.5 113 57.5
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.8e-24 115.2 93 65.6
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 3.8e-24 115.2 68 79.4
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 9.4e-23 110.5 122 54.1
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.0e-21 107.1 67 76.1
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 1.8e-21 106.3 128 53.9
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.7e-20 101.3 72 68.1
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.3e-19 100.1 62 79.0
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 4.1e-18 95.1 86 54.7
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.5e-17 91.7 46 100.0
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 4.5e-17 91.7 68 67.6
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.2e-15 85.5 53 79.2
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 5.5e-15 84.7 67 59.7
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 5.2e-13 78.2 68 55.9
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.6e-06 55.5 81 40.7


User provided reference genes

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