Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 1.2e-77 293.1 151 100.0
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 6.2e-74 280.8 154 95.5
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 1.1e-54 216.9 117 91.5
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 1.6e-53 213.0 145 80.0
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 6.7e-52 207.6 145 76.6
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 1.6e-50 203.0 145 74.5
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 1.6e-50 203.0 152 73.7
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 2.1e-50 202.6 150 72.7
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 5.3e-49 198.0 158 70.9
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 5.3e-49 198.0 161 68.9
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 1.5e-48 196.4 144 75.0
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.0e-48 196.1 157 72.6
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 2.0e-48 196.1 125 80.8
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 2.6e-48 195.7 144 74.3
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 3.4e-48 195.3 133 75.9
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 3.4e-48 195.3 157 68.2
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 3.4e-48 195.3 123 80.5
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 4.5e-48 194.9 130 76.2
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 1.0e-47 193.7 155 69.0
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 1.3e-47 193.4 146 72.6
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 1.3e-47 193.4 157 72.0
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 1.7e-47 193.0 123 81.3
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 1.7e-47 193.0 123 81.3
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 1.7e-47 193.0 136 75.0
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 2.2e-47 192.6 133 75.2
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 2.2e-47 192.6 133 75.2
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 2.2e-47 192.6 131 80.2
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 3.8e-47 191.8 122 80.3
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 6.5e-47 191.0 146 69.9
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 6.5e-47 191.0 158 68.4
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 8.4e-47 190.7 160 69.4
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 8.4e-47 190.7 155 68.4
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.1e-46 190.3 157 71.3
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 1.9e-46 189.5 117 84.6
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 2.5e-46 189.1 145 70.3
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 3.2e-46 188.7 150 69.3
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 3.2e-46 188.7 141 68.1
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 4.2e-46 188.3 126 78.6
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 5.5e-46 188.0 130 74.6
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 5.5e-46 188.0 139 67.6
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 5.5e-46 188.0 146 71.9
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 5.5e-46 188.0 122 78.7
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 7.1e-46 187.6 130 73.8
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 7.1e-46 187.6 155 67.1
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 9.3e-46 187.2 118 83.1
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 1.6e-45 186.4 139 66.9
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 2.1e-45 186.0 117 79.5
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 2.1e-45 186.0 146 70.5
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 2.7e-45 185.7 117 80.3
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 3.5e-45 185.3 124 78.2
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 4.6e-45 184.9 131 74.8
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 4.6e-45 184.9 128 78.1
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 6.0e-45 184.5 130 73.1
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 7.9e-45 184.1 140 69.3
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 7.9e-45 184.1 149 70.5
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 1.0e-44 183.7 122 77.9
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 1.0e-44 183.7 119 79.8
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 1.0e-44 183.7 127 75.6
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 1.0e-44 183.7 119 82.4
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 1.3e-44 183.3 155 67.1
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 1.8e-44 183.0 155 67.7
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 3.9e-44 181.8 128 73.4
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 3.9e-44 181.8 144 69.4
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 5.1e-44 181.4 137 73.0
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 8.7e-44 180.6 122 76.2
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 8.7e-44 180.6 141 68.1
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 8.7e-44 180.6 157 64.3
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 8.7e-44 180.6 137 71.5
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 8.7e-44 180.6 155 67.1
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 1.1e-43 180.3 142 66.9
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 1.5e-43 179.9 118 79.7
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 1.5e-43 179.9 118 79.7
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 1.5e-43 179.9 139 65.5
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.5e-43 179.9 137 72.3
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 1.5e-43 179.9 154 66.2
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 4.3e-43 178.3 119 79.8
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 5.7e-43 177.9 119 79.8
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 5.7e-43 177.9 155 66.5
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 7.4e-43 177.6 119 79.8
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 9.6e-43 177.2 127 73.2
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 9.6e-43 177.2 120 77.5
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 1.3e-42 176.8 117 77.8
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 2.1e-42 176.0 126 73.8
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 4.8e-42 174.9 117 78.6
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 4.8e-42 174.9 111 80.2
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 1.1e-41 173.7 131 71.0
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 1.1e-41 173.7 141 68.8
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 1.8e-41 172.9 118 78.0
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 3.1e-41 172.2 117 75.2
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 4.1e-41 171.8 147 64.6
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 4.1e-41 171.8 161 64.0
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 4.1e-41 171.8 140 65.7
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 6.9e-41 171.0 119 77.3
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 6.9e-41 171.0 160 65.0
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 6.9e-41 171.0 141 63.8
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 2.6e-40 169.1 116 78.4
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 5.9e-40 167.9 138 65.9
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 7.6e-40 167.5 163 59.5
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 1.3e-39 166.8 154 63.6
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 5.0e-39 164.9 155 63.2
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 6.5e-39 164.5 127 70.1
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 1.4e-38 163.3 157 59.9
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 7.2e-38 161.0 124 66.1
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 9.3e-38 160.6 117 70.1
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 7.9e-37 157.5 124 65.3
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 1.0e-36 157.1 167 55.1
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 1.3e-36 156.8 154 59.1
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 8.7e-36 154.1 78 96.2
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 8.7e-36 154.1 146 61.0
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 1.5e-35 153.3 120 69.2
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 1.3e-34 150.2 118 66.9
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 6.3e-34 147.9 78 92.3
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 4.5e-32 141.7 154 54.5
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 5.9e-32 141.4 82 81.7
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 1.1e-30 137.1 75 86.7
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 1.1e-30 137.1 108 68.5
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 1.1e-27 127.1 99 68.7
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 4.4e-27 125.2 115 58.3
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 1.7e-26 123.2 121 54.5
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 8.2e-26 120.9 89 69.7
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 8.2e-26 120.9 125 54.4
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 1.3e-23 113.6 130 50.8
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 2.7e-21 105.9 75 65.3
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 1.8e-20 103.2 75 66.7
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 1.2e-16 90.5 93 51.6
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 2.6e-16 89.4 73 61.6
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 2.7e-08 62.8 36 88.9
VMungo0684G0001 Vigna mungo HOM05D006230 ORTHO05D007598 1.9e-06 56.6 65 44.6


User provided reference genes

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