Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 6.6e-212 740.3 349 100.0
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 4.0e-177 624.8 320 91.2
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 2.2e-127 459.5 321 68.5
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 6.5e-127 458.0 320 66.6
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.9e-126 456.4 320 66.9
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 4.2e-126 455.3 320 67.8
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 1.6e-125 453.4 321 67.0
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.0e-124 450.7 326 65.6
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 1.0e-124 450.7 320 65.0
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 1.4e-121 440.3 321 64.5
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 1.6e-120 436.8 321 64.8
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 2.0e-120 436.4 321 63.6
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.9e-118 429.9 320 62.8
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 1.9e-118 429.9 322 63.0
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 2.5e-118 429.5 322 62.7
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 1.8e-116 423.3 322 63.7
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 1.5e-115 420.2 323 62.8
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 9.8e-115 417.5 322 61.2
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 9.8e-115 417.5 343 60.9
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 1.3e-114 417.2 322 61.8
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 8.3e-114 414.5 321 64.8
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 1.7e-111 406.8 317 59.9
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 1.1e-110 404.1 336 56.8
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 4.3e-110 402.1 321 61.7
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.1e-109 399.8 324 59.6
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 8.0e-109 397.9 325 59.4
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 8.0e-109 397.9 321 60.7
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 8.0e-109 397.9 321 59.2
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 5.2e-108 395.2 321 58.6
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.5e-107 393.7 322 58.1
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 2.0e-107 393.3 320 59.7
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.6e-107 392.9 329 60.2
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 3.4e-107 392.5 330 58.5
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 2.2e-106 389.8 342 54.7
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 2.9e-106 389.4 320 58.1
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 1.4e-105 387.1 323 58.2
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 1.9e-105 386.7 283 66.1
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.9e-105 386.7 329 59.9
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 1.9e-105 386.7 322 56.8
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 7.0e-105 384.8 338 55.9
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 9.2e-105 384.4 323 57.0
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 1.2e-104 384.0 326 58.0
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 1.2e-104 384.0 323 57.0
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 1.6e-104 383.6 326 58.0
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 1.6e-104 383.6 338 56.8
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 2.0e-104 383.3 322 55.9
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 2.7e-104 382.9 321 59.2
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.3e-103 380.6 322 55.9
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 3.9e-103 379.0 322 56.2
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 3.9e-103 379.0 324 57.1
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 5.0e-103 378.6 337 58.2
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 6.6e-103 378.3 322 56.2
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 1.1e-102 377.5 324 53.7
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 1.1e-102 377.5 323 56.0
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.1e-102 377.5 326 55.2
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 1.5e-102 377.1 321 56.7
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 3.3e-102 375.9 322 56.8
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 3.3e-102 375.9 322 56.8
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 4.3e-102 375.6 321 57.0
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 7.3e-102 374.8 326 55.2
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 1.6e-101 373.6 321 56.1
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 4.7e-101 372.1 321 56.7
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 1.4e-100 370.5 313 57.8
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.4e-100 370.5 382 49.2
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.3e-100 369.8 321 56.1
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 1.3e-98 364.0 292 57.2
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 2.2e-98 363.2 326 53.7
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.4e-97 360.5 320 55.0
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 1.4e-97 360.5 304 57.9
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 2.4e-97 359.8 323 56.0
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 4.1e-97 359.0 326 53.4
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 7.1e-97 358.2 321 55.8
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 1.2e-96 357.5 323 53.9
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 2.3e-95 353.2 293 59.7
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.5e-94 347.8 321 54.2
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.4e-92 344.0 364 47.5
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 3.4e-91 339.3 293 55.3
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 4.4e-91 339.0 322 52.2
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 1.3e-90 337.4 321 50.5
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 8.4e-90 334.7 321 50.5
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 1.9e-89 333.6 324 50.6
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 2.1e-85 320.1 349 48.7
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 8.1e-85 318.2 245 60.8
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 7.3e-78 295.0 296 51.4
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 1.6e-77 293.9 327 48.6
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 2.0e-75 287.0 322 46.6
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 2.2e-74 283.5 299 48.5
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 8.4e-74 281.6 278 49.3
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.3e-71 274.2 346 43.1
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 8.7e-71 271.6 315 46.0
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 1.9e-70 270.4 327 42.5
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 4.2e-65 252.7 322 41.3
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 2.7e-64 250.0 248 50.4
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.6e-61 240.7 324 42.0
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.5e-59 232.6 185 60.5
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 2.9e-58 229.9 200 56.0
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 2.9e-58 229.9 338 38.5
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 7.1e-57 225.3 321 39.3
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 1.9e-54 217.2 300 42.7
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 5.5e-41 172.6 282 34.0
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 2.1e-40 170.6 140 60.7
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 4.8e-37 159.5 180 49.4
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 9.1e-36 155.2 156 48.1
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.2e-35 154.8 151 47.0
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 3.5e-27 126.7 319 31.3
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 1.3e-26 124.8 321 29.9
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 2.2e-26 124.0 318 29.9
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 3.8e-26 123.2 319 30.4
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 6.5e-26 122.5 316 29.1
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 8.5e-26 122.1 314 30.6
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 8.5e-26 122.1 319 29.8
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 8.5e-26 122.1 321 30.2
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 8.5e-26 122.1 320 30.3
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 8.5e-26 122.1 320 30.3
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.1e-25 121.7 319 30.1
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.1e-25 121.7 319 30.1
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.5e-25 121.3 314 30.9
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.9e-25 120.9 309 30.7
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.9e-25 120.9 125 48.0
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 4.2e-25 119.8 314 30.6
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 5.5e-25 119.4 319 30.1
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 5.5e-25 119.4 321 29.6
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 5.5e-25 119.4 318 29.9
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 9.4e-25 118.6 319 29.8
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 9.4e-25 118.6 319 29.8
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 9.4e-25 118.6 314 30.6
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 1.6e-24 117.9 318 30.5
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.6e-24 117.9 318 30.2
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.6e-24 117.9 320 29.4
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.6e-24 117.9 314 30.6
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 1.6e-24 117.9 311 28.9
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 2.1e-24 117.5 319 30.1
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 2.7e-24 117.1 319 29.8
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 2.7e-24 117.1 302 32.1
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 3.6e-24 116.7 314 29.3
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 4.7e-24 116.3 327 29.1
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 1.0e-23 115.2 322 28.3
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 1.0e-23 115.2 322 28.3
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 1.0e-23 115.2 314 29.9
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 1.8e-23 114.4 313 28.8
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 1.8e-23 114.4 315 29.8
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 2.3e-23 114.0 315 28.6
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 5.2e-23 112.8 314 29.9
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 6.7e-23 112.5 319 30.1
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 8.8e-23 112.1 327 28.7
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 1.2e-22 111.7 310 29.7
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 1.5e-22 111.3 317 29.3
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.5e-22 111.3 331 28.4
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 1.5e-22 111.3 313 29.7
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 5.7e-22 109.4 316 28.8
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 5.7e-22 109.4 306 30.4
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 7.5e-22 109.0 304 29.9
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 7.5e-22 109.0 310 29.0
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 9.7e-22 108.6 307 27.7
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 9.7e-22 108.6 312 28.5
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 9.7e-22 108.6 322 29.8
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.3e-21 108.2 70 70.0
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 1.3e-21 108.2 326 29.8
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 1.3e-21 108.2 228 34.6
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 1.7e-21 107.8 319 29.2
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 6.3e-21 105.9 252 30.6
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 6.3e-21 105.9 249 32.5
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 6.3e-21 105.9 233 33.5
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 1.1e-20 105.1 318 28.6
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 2.4e-20 104.0 70 64.3
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 3.1e-20 103.6 112 44.6
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 9.1e-20 102.1 304 28.6
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.2e-19 101.7 108 45.4
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 3.8e-18 96.7 85 49.4
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 6.5e-18 95.9 207 30.9
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 8.5e-18 95.5 205 33.7
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 1.4e-15 88.2 66 63.6
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 9.8e-14 82.0 180 30.6
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 4.8e-13 79.7 63 58.7
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 1.6e-11 74.7 71 47.9
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 1.3e-10 71.6 391 24.6
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.1e-09 68.6 84 39.3
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 1.9e-09 67.8 35 85.7
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 2.3e-07 60.8 61 50.8
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 3.0e-07 60.5 52 50.0
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 2.0e-06 57.8 178 24.7


User provided reference genes

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