Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0021100 Salix brachista HOM05D006816 ORTHO05D008666 0.0e+00 1141.3 634 100.0
Potri.010G047500 Populus trichocarpa HOM05D006816 ORTHO05D008666 5.4e-204 714.9 465 85.2
TAR622G0126 Trochodendron aralioides HOM05D006816 ORTHO05D008666 1.5e-193 680.2 642 61.5
TWI36G0164 Tripterygium wilfordii HOM05D006816 ORTHO05D008666 1.2e-192 677.2 650 62.2
Gohir.D02G158100 Gossypium hirsutum HOM05D006816 ORTHO05D008666 1.1e-191 674.1 582 66.0
Gorai.005G177300 Gossypium raimondii HOM05D006816 ORTHO05D008666 1.1e-191 674.1 582 66.0
Ciclev10030964m.g Citrus clementina HOM05D006816 ORTHO05D008666 4.0e-191 672.2 632 62.0
Manes.13G022900 Manihot esculenta HOM05D006816 ORTHO05D008666 1.2e-190 670.6 668 60.9
Atru.chr11.2152 Acer truncatum HOM05D006816 ORTHO05D008666 4.2e-188 662.1 644 64.1
Dinv15216 Davidia involucrata HOM05D006816 ORTHO05D008666 1.6e-187 660.2 635 61.3
QL03p057598 Quercus lobata HOM05D006816 ORTHO05D008666 2.1e-187 659.8 605 62.3
COL.COLO4_23463 Corchorus olitorius HOM05D006816 ORTHO05D008666 6.0e-187 658.3 684 60.5
Gohir.A03G133700 Gossypium hirsutum HOM05D006816 ORTHO05D008666 6.0e-187 658.3 561 65.4
FAN22G0176 Fragaria x ananassa HOM05D006816 ORTHO05D008666 1.7e-186 656.8 647 61.1
FAN17G1412 Fragaria x ananassa HOM05D006816 ORTHO05D008666 3.6e-184 649.0 559 66.4
Haze_12261 Corylus avellana HOM05D006816 ORTHO05D008666 4.0e-183 645.6 719 56.1
Cpa.g.sc33.36 Carica papaya HOM05D006816 ORTHO05D008666 3.4e-182 642.5 556 65.5
GSVIVG01000542001 Vitis vinifera HOM05D006816 ORTHO05D008666 4.4e-182 642.1 629 60.4
Lj3C1059T10 Lonicera japonica HOM05D006816 ORTHO05D008666 1.3e-181 640.6 548 64.8
MD13G1099700 Malus domestica HOM05D006816 ORTHO05D008666 1.3e-181 640.6 631 61.0
CANSAT01G2021 Cannabis sativa HOM05D006816 ORTHO05D008666 7.8e-179 631.3 633 64.3
FAN12G1622 Fragaria x ananassa HOM05D006816 ORTHO05D008666 2.5e-177 626.3 557 66.6
Nn4g22582 Nelumbo nucifera HOM05D006816 ORTHO05D008666 4.3e-177 625.5 570 66.8
FvH4_4g25720 Fragaria vesca HOM05D006816 ORTHO05D008666 2.1e-176 623.2 636 62.4
RcHm_v2.0_Chr4g0433151 Rosa chinensis HOM05D006816 ORTHO05D008666 2.1e-176 623.2 650 61.8
CSS0008455 Camellia sinensis var. sinensis HOM05D006816 ORTHO05D008666 5.3e-175 618.6 551 67.5
Eucgr.H02486 Eucalyptus grandis HOM05D006816 ORTHO05D008666 1.2e-174 617.5 589 60.6
CARHR060480 Cardamine hirsuta HOM05D006816 ORTHO05D008666 2.7e-171 606.3 572 60.0
Sp5g22850 Schrenkiella parvula HOM05D006816 ORTHO05D008666 3.5e-171 605.9 575 60.9
HanXRQChr17g0569531 Helianthus annuus HOM05D006816 ORTHO05D008666 6.0e-171 605.1 542 62.0
Lalb_Chr07g0185401 Lupinus albus HOM05D006816 ORTHO05D008666 6.0e-171 605.1 631 57.8
Carub.0002s1430 Capsella rubella HOM05D006816 ORTHO05D008666 1.0e-170 604.4 576 59.5
PSO063G6228 Papaver somniferum HOM05D006816 ORTHO05D008666 1.0e-170 604.4 593 59.5
PSO754G0080 Papaver somniferum HOM05D006816 ORTHO05D008666 1.3e-170 604.0 593 59.7
Hund06034 Selenicereus undatus HOM05D006816 ORTHO05D008666 2.3e-170 603.2 590 59.2
Thhalv10018280m.g Eutrema salsugineum HOM05D006816 ORTHO05D008666 3.0e-170 602.8 614 58.0
BcaB03g15378 Brassica carinata HOM05D006816 ORTHO05D008666 1.1e-169 600.9 643 57.5
Lsat_1_v5_gn_4_4020 Lactuca sativa HOM05D006816 ORTHO05D008666 5.6e-169 598.6 598 60.2
AT1G67840 Arabidopsis thaliana HOM05D006816 ORTHO05D008666 7.4e-169 598.2 638 56.9
THA.LOC104825556 Tarenaya hassleriana HOM05D006816 ORTHO05D008666 1.3e-168 597.4 640 57.8
C06p38240 Brassica napus HOM05D006816 ORTHO05D008666 3.7e-168 595.9 640 56.9
CsaV3_5G031010 Cucumis sativus L. HOM05D006816 ORTHO05D008666 3.7e-168 595.9 636 56.6
BcaC08g46032 Brassica carinata HOM05D006816 ORTHO05D008666 8.1e-168 594.7 642 56.5
Aa31sc755G30 Aethionema arabicum HOM05D006816 ORTHO05D008666 1.8e-167 593.6 633 57.2
Duzib251G0886 Durio zibethinus HOM05D006816 ORTHO05D008666 1.8e-167 593.6 557 66.4
PGR119G0117 Punica granatum HOM05D006816 ORTHO05D008666 3.1e-167 592.8 605 63.0
MELO3C011940.2 Cucumis melo HOM05D006816 ORTHO05D008666 6.9e-167 591.7 606 57.4
BraA07t30858Z Brassica rapa HOM05D006816 ORTHO05D008666 1.5e-166 590.5 643 56.1
BolC6t38923H Brassica oleracea HOM05D006816 ORTHO05D008666 2.6e-166 589.7 642 56.1
Solyc05g013670.3 Solanum lycopersicum HOM05D006816 ORTHO05D008666 2.6e-166 589.7 642 54.5
AUR62024254 Chenopodium quinoa HOM05D006816 ORTHO05D008666 5.8e-166 588.6 585 58.1
A07p32350 Brassica napus HOM05D006816 ORTHO05D008666 1.0e-165 587.8 643 56.1
ClCG05G025840 Citrullus lanatus HOM05D006816 ORTHO05D008666 1.0e-165 587.8 634 56.8
Sopen05g008580 Solanum pennellii HOM05D006816 ORTHO05D008666 1.7e-165 587.0 640 54.5
PGSC0003DMG400018598 Solanum tuberosum HOM05D006816 ORTHO05D008666 2.2e-165 586.6 650 53.8
AL2G26590 Arabidopsis lyrata HOM05D006816 ORTHO05D008666 1.9e-164 583.6 636 56.6
Glyma.05G174600 Glycine max HOM05D006816 ORTHO05D008666 9.3e-164 581.3 553 60.8
Medtr8g089810 Medicago truncatula HOM05D006816 ORTHO05D008666 1.6e-163 580.5 552 59.6
Oeu057544.1 Olea europaea HOM05D006816 ORTHO05D008666 2.1e-163 580.1 625 55.5
Sed0004203 Sechium edule HOM05D006816 ORTHO05D008666 2.7e-163 579.7 594 56.2
Migut.K00611 Erythranthe guttata HOM05D006816 ORTHO05D008666 3.5e-163 579.3 547 60.5
VMungo0251G0196 Vigna mungo HOM05D006816 ORTHO05D008666 3.5e-163 579.3 606 57.6
EL10Ac6g13857 Beta vulgaris HOM05D006816 ORTHO05D008666 7.9e-163 578.2 585 58.5
Ca_17778_v3 Cicer arietinum L. HOM05D006816 ORTHO05D008666 7.9e-163 578.2 553 59.1
ECA234G3219 Erigeron canadensis HOM05D006816 ORTHO05D008666 1.8e-162 577.0 537 59.6
Nitab4.5_0006963g0030 Nicotiana tabacum HOM05D006816 ORTHO05D008666 3.9e-162 575.9 647 56.1
Ah.02g130220 Amaranthus hybridus HOM05D006816 ORTHO05D008666 7.4e-161 571.6 628 57.0
Aqoxy5G03738 Aquilegia oxysepala HOM05D006816 ORTHO05D008666 9.6e-161 571.2 535 59.4
TPR.G6183 Trifolium pratense HOM05D006816 ORTHO05D008666 4.8e-160 568.9 552 58.5
Phvul.002G259600 Phaseolus vulgaris HOM05D006816 ORTHO05D008666 1.4e-159 567.4 626 55.8
Lj4g0008868 Lotus japonicus HOM05D006816 ORTHO05D008666 9.0e-159 564.7 627 55.0
vmacro01121 Vaccinium macrocarpon HOM05D006816 ORTHO05D008666 3.8e-157 559.3 644 55.1
AUR62005487 Chenopodium quinoa HOM05D006816 ORTHO05D008666 2.3e-154 550.1 623 53.5
Cc11_g15850 Coffea canephora HOM05D006816 ORTHO05D008666 3.7e-152 542.7 612 54.4
Psat7g059360 Pisum sativum HOM05D006816 ORTHO05D008666 2.4e-151 540.0 546 57.0
SalBow2G0630 Salvia bowleyana HOM05D006816 ORTHO05D008666 3.4e-150 536.2 652 51.2
Peaxi162Scf00128g00318 Petunia axillaris HOM05D006816 ORTHO05D008666 5.9e-150 535.4 589 54.7
Zm00001eb319330 Zea mays HOM05D006816 ORTHO05D008666 1.3e-144 517.7 603 50.7
unitig_699.g19932 Utricularia gibba HOM05D006816 ORTHO05D008666 6.3e-144 515.4 582 52.9
DCAR_031163 Daucus carota HOM05D006816 ORTHO05D008666 1.1e-135 488.0 609 49.9
Actinidia01356 Actinidia chinensis HOM05D006816 ORTHO05D008666 5.0e-133 479.2 583 54.7
ATR0824G245 Amborella trichopoda HOM05D006816 ORTHO05D008666 1.1e-132 478.0 653 48.4
CAN.G436.5 Capsicum annuum HOM05D006816 ORTHO05D008666 5.5e-132 475.7 475 56.4
Sc11g0000930 Simmondsia chinensis HOM05D006816 ORTHO05D008666 7.2e-132 475.3 462 64.7
Thecc.02G261900 Theobroma cacao HOM05D006816 ORTHO05D008666 1.1e-127 461.5 477 60.8
Nitab4.5_0000524g0100 Nicotiana tabacum HOM05D006816 ORTHO05D008666 1.9e-124 450.7 561 51.9
FAN07G2231 Fragaria x ananassa HOM05D006816 ORTHO05D008666 3.8e-117 426.4 472 58.1
SGA_v2.0_scaffold100G29566 Striga asiatica HOM05D006816 ORTHO05D008666 6.6e-109 399.1 564 48.4
CiPaw.05G180700 Carya illinoinensis HOM05D006816 ORTHO05D008666 1.5e-108 397.9 428 57.9
SEGI_18687 Sequoiadendron giganteum HOM05D006816 ORTHO05D008666 1.5e-108 397.9 552 44.2
Prupe.1G246300 Prunus persica HOM05D006816 ORTHO05D008666 7.5e-105 385.6 463 53.8
arahy.Tifrunner.gnm1.ann1.2HFS1Z Arachis hypogaea HOM05D006816 ORTHO05D008666 3.7e-104 383.3 457 54.0
arahy.Tifrunner.gnm1.ann1.CH9KSW Arachis hypogaea HOM05D006816 ORTHO05D008666 7.0e-103 379.0 419 56.3
HPP92_023364 Vanilla planifolia HOM05D006816 ORTHO05D008666 5.8e-89 332.8 312 59.0
Os12g0292900 Oryza sativa ssp. japonica HOM05D006816 ORTHO05D008666 3.2e-87 327.0 462 47.4
CDE02G3152 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 2.2e-72 277.7 419 45.6
Mapoly0088s0066 Marchantia polymorpha HOM05D006816 ORTHO05D008666 2.0e-65 254.6 578 34.1
MBI17_g43191_MAGBIO Magnolia biondii HOM05D006816 ORTHO05D008666 2.3e-53 214.5 322 46.9
Pp3c11_24610 Physcomitrium patens HOM05D006816 ORTHO05D008666 3.7e-43 180.6 547 30.5
Glyma.08G131850 Glycine max HOM05D006816 ORTHO05D008666 1.8e-37 161.8 174 52.9
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 2.6e-33 147.9 143 55.2
COL.COLO4_35805 Corchorus olitorius HOM05D006816 ORTHO05D008666 5.0e-32 143.7 99 70.7
Psat3g153200 Pisum sativum HOM05D006816 ORTHO05D008666 1.9e-31 141.7 139 56.1
HPP92_023363 Vanilla planifolia HOM05D006816 ORTHO05D008666 7.2e-31 139.8 145 53.8
Psat4g077560 Pisum sativum HOM05D006816 ORTHO05D008666 1.8e-29 135.2 111 64.9
CBR_g52389 Chara braunii HOM05D006816 ORTHO05D008666 1.3e-24 119.0 350 29.7
Psat2g121560 Pisum sativum HOM05D006816 ORTHO05D008666 1.7e-24 118.6 120 55.0
CDE09G0157 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 1.6e-22 112.1 166 42.2
Actinidia08129 Actinidia chinensis HOM05D006816 ORTHO05D008666 6.3e-19 100.1 124 50.0
Actinidia01355 Actinidia chinensis HOM05D006816 ORTHO05D008666 8.2e-19 99.8 62 74.2
FAN22G1065 Fragaria x ananassa HOM05D000247 ORTHO05D000288 1.1e-15 89.4 136 46.3
FvH4_4g35670 Fragaria vesca HOM05D006816 ORTHO05D008666 9.4e-15 86.3 136 45.6
Atru.chr11.2547 Acer truncatum HOM05D006816 ORTHO05D008666 1.9e-07 62.0 85 43.5
Glyma.08G131775 Glycine max HOM05D006816 ORTHO05D008666 1.9e-07 62.0 82 50.0
Atru.chr11.2546 Acer truncatum HOM05D006816 ORTHO05D008666 4.7e-06 57.4 72 47.2


User provided reference genes

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