Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 0.0e+00 2109.0 1095 100.0
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 0.0e+00 1576.2 1060 82.4
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.2e-115 422.2 1030 37.1
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 2.9e-96 357.8 1147 31.5
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 6.9e-90 336.7 1117 31.2
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 1.0e-85 322.8 1109 31.3
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.8e-77 295.4 920 32.0
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 4.1e-74 284.3 746 34.0
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 6.5e-72 276.9 912 31.8
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.3e-69 268.5 919 30.9
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 3.7e-67 261.2 443 43.6
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 4.8e-67 260.8 428 43.5
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 1.1e-66 259.6 339 51.0
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 4.5e-65 254.2 663 34.1
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 7.2e-63 246.9 765 31.0
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 2.7e-62 245.0 773 30.9
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 3.9e-61 241.1 780 31.5
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 9.7e-60 236.5 352 45.5
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 2.2e-59 235.3 425 40.2
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 6.3e-59 233.8 364 42.9
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 4.1e-58 231.1 437 41.6
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 4.1e-58 231.1 732 34.4
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 2.6e-57 228.4 570 36.5
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 2.6e-57 228.4 754 32.0
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 3.5e-57 228.0 749 34.3
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.7e-56 225.7 378 42.3
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 2.2e-56 225.3 284 49.6
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 3.8e-56 224.6 749 31.2
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 8.5e-56 223.4 768 32.9
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 8.5e-56 223.4 313 45.7
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.5e-55 221.9 512 38.7
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 2.7e-54 218.4 314 49.0
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.4e-53 216.1 496 34.9
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.8e-53 215.7 441 38.1
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 3.0e-53 214.9 405 41.2
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 6.7e-53 213.8 570 36.5
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 8.8e-53 213.4 550 33.5
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.2e-52 213.0 738 32.1
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.0e-52 212.2 384 44.8
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 8.2e-51 206.8 403 38.0
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.8e-50 205.7 350 43.1
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 2.4e-50 205.3 895 29.1
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 2.4e-50 205.3 345 44.1
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 1.2e-49 203.0 429 36.6
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.2e-49 203.0 229 50.2
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 2.0e-49 202.2 773 28.6
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 2.2e-48 198.7 942 28.1
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.1e-47 196.4 389 37.3
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.5e-47 196.1 445 35.7
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 5.5e-47 194.1 455 36.3
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.1e-46 192.2 411 37.0
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 2.7e-46 191.8 228 46.9
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 4.7e-46 191.0 317 40.1
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 8.8e-45 186.8 368 39.7
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 8.8e-45 186.8 305 42.6
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 3.4e-44 184.9 432 37.0
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 5.7e-44 184.1 422 37.9
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 2.8e-43 181.8 717 29.4
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 3.7e-43 181.4 457 34.1
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 1.4e-42 179.5 352 39.8
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.4e-42 178.7 210 48.1
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 5.4e-42 177.6 404 36.1
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 7.0e-42 177.2 376 37.8
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 7.7e-41 173.7 222 46.8
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 6.5e-40 170.6 413 35.1
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 6.5e-40 170.6 327 39.8
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.5e-39 168.7 1095 25.6
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 4.2e-39 167.9 353 37.1
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 5.5e-39 167.5 315 40.0
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.0e-37 163.3 200 48.0
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.4e-37 162.9 436 31.9
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 3.0e-37 161.8 248 47.2
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 5.2e-37 161.0 276 42.8
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.2e-36 159.8 193 48.2
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 3.4e-36 158.3 402 33.8
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 5.7e-36 157.5 195 47.7
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 5.7e-36 157.5 195 47.7
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.7e-36 157.5 358 37.7
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 5.7e-36 157.5 390 36.9
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 9.8e-36 156.8 402 35.1
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 9.8e-36 156.8 669 28.6
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.7e-35 154.8 328 37.2
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 4.9e-35 154.5 229 44.5
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 4.9e-35 154.5 485 34.2
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 6.3e-35 154.1 282 38.3
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.4e-34 152.9 196 45.9
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 4.1e-34 151.4 202 45.5
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 5.4e-34 151.0 212 43.9
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 4.5e-33 147.9 670 29.4
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 4.5e-33 147.9 300 39.7
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 1.0e-32 146.7 338 35.5
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 1.0e-32 146.7 183 46.4
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.1e-31 143.3 142 56.3
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.5e-31 142.9 252 40.5
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.9e-31 142.5 307 36.8
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 2.5e-31 142.1 446 32.3
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 4.3e-31 141.4 195 42.1
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 5.6e-31 141.0 255 37.6
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 5.6e-31 141.0 139 56.1
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 5.6e-31 141.0 262 41.6
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 2.8e-30 138.7 185 42.7
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 4.7e-30 137.9 272 36.0
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.4e-29 136.3 298 36.9
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 2.3e-29 135.6 287 36.6
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 2.3e-29 135.6 246 39.0
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 3.0e-29 135.2 358 35.8
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 4.0e-29 134.8 272 39.0
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 5.2e-29 134.4 446 31.6
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 8.9e-29 133.7 287 36.6
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 8.9e-29 133.7 489 29.9
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 7.5e-28 130.6 177 42.4
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 7.5e-28 130.6 177 42.4
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 7.5e-28 130.6 413 31.2
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.7e-27 129.4 358 31.6
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 2.9e-27 128.6 253 35.2
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.7e-27 128.3 353 32.6
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 3.7e-27 128.3 300 35.0
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 8.3e-27 127.1 237 36.7
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 9.2e-26 123.6 664 27.7
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 3.5e-25 121.7 300 34.3
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 7.8e-25 120.6 301 33.2
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.3e-24 119.8 799 26.0
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 5.0e-24 117.9 438 31.7
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 5.0e-24 117.9 229 35.4
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 1.1e-23 116.7 114 51.8
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.4e-21 109.8 180 41.1
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.2e-20 106.7 295 34.2
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.2e-20 106.7 150 42.0
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 3.4e-20 105.1 636 26.6
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 3.4e-20 105.1 154 46.1
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 5.8e-20 104.4 253 34.8
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.5e-20 104.0 215 32.1
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 3.7e-19 101.7 124 38.7
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 6.4e-19 100.9 358 30.4
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.4e-18 99.0 105 50.5
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.2e-18 98.6 229 32.3
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.2e-17 96.7 145 38.6
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.8e-17 94.0 126 40.5
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.8e-17 94.0 126 40.5
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 3.0e-16 92.0 132 36.4
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 5.0e-16 91.3 61 70.5
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 9.5e-15 87.0 456 27.4
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 2.8e-14 85.5 56 78.6
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 3.6e-14 85.1 347 26.8
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 8.1e-14 84.0 161 36.6
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 4.0e-13 81.6 107 40.2
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 8.9e-13 80.5 372 28.2
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.5e-12 79.7 135 34.8
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 2.9e-11 75.5 178 35.4
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.6e-09 69.7 85 48.2
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 2.1e-09 69.3 208 29.3
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 1.0e-08 67.0 212 32.5
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 2.3e-08 65.9 262 24.0
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 7.3e-07 60.8 99 39.4
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.5e-07 60.5 116 36.2
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.2e-06 60.1 45 62.2
Cfa024558 Carpinus fangiana HOM05D003739 ORTHO05D003996 8.1e-06 57.4 60 43.3


User provided reference genes

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