Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 3.7e-94 348.2 176 100.0
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 1.7e-22 110.2 175 45.7
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 9.3e-21 104.4 176 43.2
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 6.0e-20 101.7 176 44.9
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 4.3e-18 95.5 173 39.3
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 4.3e-18 95.5 176 39.8
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 5.6e-18 95.1 175 41.1
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 7.3e-18 94.7 178 41.0
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 1.6e-17 93.6 175 40.0
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.6e-17 93.6 176 40.3
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.8e-16 90.1 167 41.3
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 2.6e-15 86.3 173 37.0
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 2.6e-15 86.3 176 39.8
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 2.6e-15 86.3 163 40.5
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 2.6e-15 86.3 163 40.5
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 9.9e-15 84.3 173 37.6
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 1.7e-14 83.6 51 84.3
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 2.9e-14 82.8 174 39.1
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 8.4e-14 81.3 170 37.1
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 8.4e-14 81.3 169 37.3
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 1.1e-13 80.9 176 36.9
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 1.4e-13 80.5 171 40.4
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 1.9e-13 80.1 51 78.4
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 1.9e-13 80.1 176 36.9
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 2.4e-13 79.7 167 38.9
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 4.2e-13 79.0 45 86.7
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 4.2e-13 79.0 45 86.7
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 5.4e-13 78.6 170 37.1
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 5.4e-13 78.6 51 76.5
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 9.3e-13 77.8 45 86.7
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 1.6e-12 77.0 44 86.4
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 2.7e-12 76.3 75 53.3
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 2.7e-12 76.3 174 35.6
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 3.5e-12 75.9 174 35.6
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 6.0e-12 75.1 56 69.6
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 7.9e-12 74.7 48 79.2
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 7.9e-12 74.7 68 63.2
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.3e-11 73.9 174 35.1
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 1.8e-11 73.6 45 77.8
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.8e-11 73.6 173 34.7
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 2.3e-11 73.2 174 35.6
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.3e-11 73.2 173 34.7
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 3.0e-11 72.8 170 34.7
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 3.0e-11 72.8 167 35.9
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 3.0e-11 72.8 41 85.4
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.9e-11 72.4 45 75.6
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.9e-11 72.4 45 75.6
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 3.9e-11 72.4 45 75.6
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 3.9e-11 72.4 45 80.0
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 3.9e-11 72.4 44 84.1
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 3.9e-11 72.4 64 67.2
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 5.1e-11 72.0 41 82.9
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 5.1e-11 72.0 41 82.9
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 6.7e-11 71.6 41 82.9
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 6.7e-11 71.6 44 77.3
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 6.7e-11 71.6 173 33.5
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 1.1e-10 70.9 49 73.5
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 1.1e-10 70.9 165 33.9
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 1.5e-10 70.5 41 80.5
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 1.5e-10 70.5 41 85.4
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.5e-10 70.5 41 85.4
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 3.3e-10 69.3 45 75.6
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 3.3e-10 69.3 176 33.5
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 3.3e-10 69.3 174 33.3
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 3.3e-10 69.3 41 82.9
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 4.3e-10 68.9 44 81.8
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 4.3e-10 68.9 50 76.0
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 4.3e-10 68.9 44 81.8
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 4.3e-10 68.9 175 33.7
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 4.3e-10 68.9 176 34.1
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 5.6e-10 68.6 41 78.0
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 5.6e-10 68.6 41 80.5
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 7.4e-10 68.2 165 33.9
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.4e-10 68.2 41 78.0
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 9.6e-10 67.8 160 35.0
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 1.6e-09 67.0 175 36.6
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 1.6e-09 67.0 175 34.9
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 2.8e-09 66.2 41 78.0
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 2.8e-09 66.2 174 33.3
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.8e-09 66.2 41 75.6
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 2.8e-09 66.2 45 80.0
HanXRQChr01g0001301 Helianthus annuus HOM05D003821 ORTHO05D004449 1.1e-08 64.3 43 76.7
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 3.1e-08 62.8 174 33.3
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 3.1e-08 62.8 176 35.2
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 4.0e-08 62.4 173 32.9
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 9.0e-08 61.2 169 34.9
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 9.0e-08 61.2 45 68.9
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 9.0e-08 61.2 31 96.8
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 9.0e-08 61.2 35 85.7
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.5e-07 60.5 83 45.8
Rhsim04G0221500 Rhododendron simsii HOM05D003821 ORTHO05D004449 2.0e-07 60.1 184 34.2
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 3.4e-07 59.3 34 82.4
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 7.6e-07 58.2 36 77.8
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 7.6e-07 58.2 39 74.4
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 9.9e-07 57.8 171 33.3
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 9.9e-07 57.8 31 90.3
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.3e-06 57.4 32 84.4
Gorai.007G237400 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.3e-06 57.4 156 33.3
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 1.3e-06 57.4 39 76.9
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 1.7e-06 57.0 171 33.3
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.2e-06 56.6 175 29.7
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 2.9e-06 56.2 82 43.9
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.9e-06 56.2 40 70.0
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 4.9e-06 55.5 38 68.4
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 4.9e-06 55.5 38 68.4
RcHm_v2.0_Chr4g0422221 Rosa chinensis HOM05D003821 ORTHO05D004449 4.9e-06 55.5 40 70.0
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.4e-06 55.1 40 70.0
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 6.4e-06 55.1 31 83.9


User provided reference genes

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