Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 5.8e-92 340.9 174 100.0
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.5e-58 229.2 150 79.3
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 2.0e-39 166.4 150 56.7
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 1.6e-36 156.8 146 57.5
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 4.5e-36 155.2 154 52.6
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 5.9e-36 154.8 158 54.4
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 1.2e-33 147.1 125 56.0
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 2.1e-33 146.4 150 53.3
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 3.6e-33 145.6 133 56.4
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 3.6e-33 145.6 135 54.8
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 5.2e-32 141.7 112 58.9
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.2e-30 136.3 120 59.2
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 3.7e-30 135.6 120 58.3
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 8.3e-30 134.4 120 58.3
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 1.4e-29 133.7 153 49.7
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 7.0e-29 131.3 127 53.5
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 9.1e-29 131.0 123 54.5
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.6e-28 130.2 119 56.3
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 1.6e-28 130.2 164 46.3
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 7.7e-28 127.9 121 52.1
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.3e-27 127.1 132 51.5
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.3e-27 127.1 132 51.5
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 5.0e-27 125.2 121 54.5
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 6.5e-27 124.8 123 51.2
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 5.5e-26 121.7 132 50.8
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 5.5e-26 121.7 119 53.8
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 7.2e-26 121.3 133 52.6
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.2e-25 120.6 166 43.4
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 2.1e-25 119.8 135 48.9
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 2.8e-25 119.4 136 49.3
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 2.8e-25 119.4 120 50.8
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 3.6e-25 119.0 120 52.5
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 1.0e-24 117.5 136 50.0
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 1.0e-24 117.5 121 52.9
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 1.4e-24 117.1 150 44.7
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.8e-24 116.7 134 46.3
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 2.3e-24 116.3 159 40.9
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 3.0e-24 115.9 150 44.0
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 4.0e-24 115.5 161 40.4
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 8.9e-24 114.4 132 46.2
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 8.9e-24 114.4 115 47.0
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.5e-23 113.6 138 44.9
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 2.6e-23 112.8 157 42.0
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 2.6e-23 112.8 129 46.5
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 2.6e-23 112.8 134 46.3
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 2.6e-23 112.8 108 50.0
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 3.4e-23 112.5 132 48.5
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 5.7e-23 111.7 121 47.9
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 7.5e-23 111.3 128 50.0
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 7.5e-23 111.3 129 47.3
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 7.5e-23 111.3 118 50.8
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.3e-22 110.5 129 45.7
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 1.7e-22 110.2 121 47.1
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 1.7e-22 110.2 118 48.3
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 2.2e-22 109.8 131 44.3
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 2.2e-22 109.8 129 45.7
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.2e-22 109.8 150 42.7
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 2.8e-22 109.4 136 46.3
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 4.9e-22 108.6 142 43.7
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 4.9e-22 108.6 129 43.4
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 8.3e-22 107.8 114 50.0
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 8.3e-22 107.8 149 40.9
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 8.3e-22 107.8 147 42.9
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 1.1e-21 107.5 143 45.5
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 1.8e-21 106.7 158 43.7
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 2.4e-21 106.3 129 41.9
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 3.1e-21 105.9 129 41.1
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 4.1e-21 105.5 121 47.1
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 1.6e-20 103.6 148 35.8
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 2.7e-20 102.8 153 40.5
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 4.5e-20 102.1 122 44.3
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 4.5e-20 102.1 132 45.5
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 5.9e-20 101.7 141 42.6
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 7.8e-20 101.3 137 41.6
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 7.8e-20 101.3 126 43.7
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 7.8e-20 101.3 132 42.4
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 7.8e-20 101.3 132 42.4
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 1.0e-19 100.9 126 43.7
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.0e-19 100.9 126 43.7
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 1.0e-19 100.9 160 40.0
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 1.7e-19 100.1 126 42.9
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 2.3e-19 99.8 119 50.4
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 5.0e-19 98.6 121 43.8
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 1.9e-18 96.7 127 41.7
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.9e-18 96.7 150 34.7
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.9e-18 96.7 150 34.7
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 1.9e-18 96.7 174 36.2
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 4.3e-18 95.5 131 42.7
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 4.3e-18 95.5 132 40.9
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 5.6e-18 95.1 125 42.4
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.6e-17 93.6 150 34.7
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 1.6e-17 93.6 140 40.7
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 6.1e-17 91.7 116 43.1
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 6.1e-17 91.7 121 45.5
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 1.8e-16 90.1 130 40.0
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 2.3e-16 89.7 150 39.3
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 4.0e-16 89.0 150 38.0
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 5.2e-16 88.6 103 47.6
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 5.2e-16 88.6 117 38.5
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 5.2e-16 88.6 121 42.1
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 5.2e-16 88.6 121 42.1
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 6.8e-16 88.2 146 39.0
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 6.8e-16 88.2 119 40.3
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 1.5e-15 87.0 128 41.4
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 4.4e-15 85.5 128 42.2
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 5.8e-15 85.1 89 47.2
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 9.8e-15 84.3 145 37.2
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 9.8e-15 84.3 135 38.5
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.7e-14 83.6 131 39.7
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 2.9e-14 82.8 124 41.1
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 3.7e-14 82.4 146 37.0
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 6.4e-14 81.6 145 36.6
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 6.4e-14 81.6 129 41.1
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 8.3e-14 81.3 159 35.2
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 1.1e-13 80.9 147 36.1
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 2.4e-13 79.7 136 36.8
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 9.2e-13 77.8 71 49.3
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 1.2e-12 77.4 121 38.0
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 1.6e-12 77.0 131 38.2
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 2.0e-12 76.6 122 40.2
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 3.5e-12 75.9 139 38.1
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 7.8e-12 74.7 158 34.8
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 1.3e-11 73.9 121 36.4
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 2.3e-11 73.2 122 38.5
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 2.3e-11 73.2 122 38.5
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 3.0e-11 72.8 122 38.5
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 3.0e-11 72.8 119 40.3
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 3.9e-11 72.4 122 37.7
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 3.9e-11 72.4 122 37.7
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 3.9e-11 72.4 122 37.7
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 3.9e-11 72.4 121 35.5
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 1.5e-10 70.5 115 37.4
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 7.3e-10 68.2 141 30.5
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 8.0e-09 64.7 81 40.7
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 8.0e-09 64.7 121 38.0
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 3.1e-08 62.8 121 37.2
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 4.0e-08 62.4 85 42.4
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 3.4e-07 59.3 121 36.4
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 7.5e-07 58.2 121 35.5
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 7.5e-07 58.2 121 35.5
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 7.5e-07 58.2 158 32.9
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 2.2e-06 56.6 86 39.5
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 4.9e-06 55.5 86 39.5
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 6.4e-06 55.1 122 36.1


User provided reference genes

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