Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1714.1 849 100.0
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1544.6 792 96.3
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1261.5 794 79.6
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1241.1 794 78.3
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1234.9 794 77.6
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1228.8 793 77.3
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1227.2 800 77.1
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1221.8 793 76.9
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1216.8 794 77.5
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1211.8 794 76.4
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1209.9 794 76.4
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1209.5 794 76.7
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1206.8 793 76.9
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1203.7 794 76.6
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1194.9 794 76.2
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1194.1 794 75.7
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1192.9 812 74.4
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1182.2 795 76.1
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1179.5 796 74.5
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1176.4 794 74.9
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1176.0 794 74.9
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1173.7 774 76.9
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1170.6 794 74.8
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1165.6 792 73.1
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1160.6 796 74.1
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1156.0 834 70.9
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1144.4 792 72.9
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1144.0 850 70.4
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1140.6 797 73.1
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1129.4 795 73.0
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1128.6 797 71.3
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1128.6 796 73.5
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1127.1 796 73.4
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1122.5 814 71.0
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1122.5 814 71.0
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1122.1 796 71.1
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1122.1 796 73.2
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 0.0e+00 1110.5 750 76.3
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1108.6 793 70.5
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1106.3 793 70.2
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 0.0e+00 1105.9 795 71.6
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1102.0 799 71.2
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1102.0 792 70.3
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1092.8 795 69.7
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1092.8 795 69.6
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1091.6 793 71.1
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1090.9 795 69.8
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1088.9 794 70.2
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1087.0 788 69.8
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1082.4 794 69.9
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1080.1 793 68.7
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1079.3 793 68.9
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1077.8 796 69.2
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 5.8e-312 1074.7 793 68.5
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 8.3e-309 1063.5 862 65.8
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 7.8e-307 1057.0 795 68.4
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 4.3e-305 1051.2 797 69.0
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 5.6e-305 1050.8 793 68.0
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 1.8e-303 1045.8 796 67.3
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 1.2e-302 1043.1 795 67.9
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 7.5e-302 1040.4 795 68.2
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 9.2e-300 1033.5 794 67.5
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 6.0e-299 1030.8 864 63.2
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 1.1e-297 1026.5 803 66.0
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 2.3e-295 1018.8 793 66.3
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 7.0e-292 1007.3 793 66.0
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 1.2e-288 996.5 795 65.4
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 2.8e-288 995.3 802 64.8
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 3.9e-282 974.9 777 66.0
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 5.1e-282 974.5 800 64.6
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 1.5e-281 973.0 777 65.4
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 1.5e-281 973.0 797 64.1
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 8.4e-277 957.2 796 62.8
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 1.0e-274 950.3 794 63.0
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 1.3e-274 949.9 794 63.1
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 1.3e-274 949.9 809 62.5
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 5.2e-271 937.9 794 61.7
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 2.0e-270 936.0 794 61.7
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 3.4e-270 935.3 794 62.1
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 2.1e-267 926.0 803 62.1
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 6.0e-267 924.5 792 61.6
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 1.8e-263 912.9 796 61.7
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 2.2e-261 906.0 795 61.1
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 2.2e-261 906.0 795 61.1
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 1.1e-260 903.7 794 61.2
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 9.3e-260 900.6 794 61.2
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 1.2e-259 900.2 794 61.0
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 5.6e-257 891.3 792 60.7
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 2.3e-250 869.4 795 59.4
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 2.5e-244 849.4 797 57.8
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 5.1e-242 841.6 794 58.6
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 2.2e-240 836.3 796 58.2
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 3.4e-238 828.9 703 62.7
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 7.4e-233 811.2 797 58.2
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.3e-229 800.4 796 57.0
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 2.3e-202 709.9 796 52.4
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 9.8e-201 704.5 660 59.2
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 7.0e-199 698.4 621 59.4
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 5.9e-190 668.7 398 81.4
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.4e-183 647.5 460 73.3
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 2.4e-183 646.7 369 85.6
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.3e-178 630.2 847 46.4
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 7.0e-175 618.6 836 45.7
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 1.1e-167 594.7 413 71.9
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.3e-149 534.6 795 42.3
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 5.1e-133 479.6 513 53.4
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 5.0e-128 463.0 350 68.6
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 1.8e-125 454.5 389 65.0
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.4e-119 434.9 277 75.8
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 5.7e-116 422.9 305 72.1
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 8.5e-96 355.9 564 42.2
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 8.5e-96 355.9 564 42.2
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 3.2e-87 327.4 283 58.3
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 8.8e-85 319.3 285 64.2
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.7e-83 315.1 175 86.9
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.0e-77 294.3 374 48.1
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 5.9e-73 280.0 336 50.6
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 5.0e-72 276.9 151 86.8
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 4.3e-63 247.3 137 85.4
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.7e-59 235.3 145 80.0
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 1.6e-57 228.8 800 27.8
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.3e-56 224.9 174 64.4
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 9.2e-50 203.0 117 76.1
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.1e-37 162.9 186 52.2
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.1e-32 144.1 169 45.6
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 1.2e-28 132.9 153 42.5
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 3.2e-26 124.8 129 51.9
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 3.9e-24 117.9 161 41.0
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 6.9e-21 107.1 192 33.9
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 2.1e-17 95.5 58 70.7
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 1.0e-16 93.2 129 41.9
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.7e-14 84.7 91 51.6
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.1e-13 81.6 55 70.9
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 4.1e-13 81.3 118 41.5
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 65 63.1
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 65 63.1
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 65 63.1
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 65 63.1
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 65 63.1
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 65 63.1
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 65 63.1
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 65 63.1
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 65 63.1
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.9e-13 80.5 65 63.1
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 1.1e-10 73.2 33 93.9
VMungo1127G0889 Vigna mungo HOM05D005283 ORTHO05D006769 3.9e-08 64.7 61 50.8
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 2.8e-06 58.5 37 67.6


User provided reference genes

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