Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 0.0e+00 1273.1 647 100.0
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 0.0e+00 1135.9 647 89.3
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 7.5e-286 986.9 647 77.6
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 3.7e-285 984.6 648 78.1
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 3.3e-217 758.8 687 60.7
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 8.5e-213 744.2 682 60.6
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 7.2e-212 741.1 686 60.1
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 3.3e-209 732.3 687 59.7
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 1.3e-208 730.3 685 59.4
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 3.4e-206 722.2 671 58.9
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 4.5e-206 721.8 707 56.4
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 3.9e-202 708.8 676 58.1
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 4.8e-200 701.8 692 56.8
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 1.6e-198 696.8 683 57.0
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 4.5e-198 695.3 685 59.0
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 2.2e-197 693.0 684 59.4
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 8.0e-195 684.5 684 58.9
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 9.7e-193 677.6 697 54.2
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 4.8e-192 675.2 676 55.3
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 4.2e-188 662.1 697 54.8
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 5.5e-188 661.8 854 46.4
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 9.4e-188 661.0 669 56.8
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 8.0e-187 657.9 693 55.1
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 1.4e-186 657.1 696 55.5
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 6.8e-186 654.8 680 54.6
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 3.4e-185 652.5 680 55.3
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 3.7e-184 649.0 670 54.9
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 1.1e-183 647.5 697 54.4
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 7.0e-183 644.8 697 53.7
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.0e-181 641.0 635 57.5
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 2.9e-181 639.4 671 55.1
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.5e-180 636.3 680 54.0
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 3.3e-180 636.0 630 55.6
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.6e-177 626.3 669 52.9
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 7.5e-177 624.8 671 53.1
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 2.2e-176 623.2 671 52.8
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 1.8e-175 620.2 611 57.0
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 9.2e-175 617.8 686 52.6
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 6.6e-173 611.7 679 52.3
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 6.1e-171 605.1 689 51.5
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 3.2e-167 592.8 684 51.0
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 5.4e-167 592.0 621 53.8
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 5.4e-167 592.0 663 52.2
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 7.0e-167 591.7 679 51.8
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 9.2e-167 591.3 633 52.9
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 1.2e-166 590.9 688 52.0
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 3.5e-166 589.3 682 53.1
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 4.6e-166 589.0 694 50.6
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 3.9e-165 585.9 629 54.1
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 6.6e-165 585.1 673 49.8
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 1.2e-163 580.9 714 49.4
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 6.2e-163 578.6 701 50.6
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 6.2e-163 578.6 744 48.1
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 1.2e-161 574.3 676 50.3
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 2.0e-161 573.5 672 50.7
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 3.4e-161 572.8 678 50.9
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 5.8e-161 572.0 683 51.2
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 7.5e-161 571.6 683 50.7
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 7.5e-161 571.6 705 48.2
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 1.3e-160 570.9 694 50.0
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 1.7e-160 570.5 683 50.8
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 1.1e-159 567.8 672 50.3
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 1.9e-159 567.0 663 52.3
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 3.2e-159 566.2 664 51.5
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 4.1e-159 565.8 616 52.9
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 4.1e-159 565.8 688 49.9
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 4.1e-159 565.8 694 49.7
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 9.2e-159 564.7 694 49.7
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 7.8e-158 561.6 699 50.4
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 1.0e-157 561.2 684 51.2
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 2.3e-157 560.1 666 50.2
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 5.6e-156 555.4 724 46.1
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 1.6e-155 553.9 716 48.0
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 1.1e-154 551.2 697 48.1
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 6.8e-154 548.5 588 53.2
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 1.2e-153 547.7 638 51.1
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 1.2e-153 547.7 643 52.9
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 1.2e-153 547.7 661 52.3
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 1.2e-153 547.7 662 51.7
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 1.5e-153 547.4 639 51.3
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 4.4e-153 545.8 662 51.5
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 5.8e-153 545.4 665 50.4
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 1.7e-152 543.9 670 48.2
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 2.2e-152 543.5 642 52.0
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 2.2e-152 543.5 729 47.7
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 3.7e-152 542.7 640 51.2
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 6.4e-152 542.0 662 50.9
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 1.4e-151 540.8 649 51.2
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 4.1e-151 539.3 662 51.1
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 7.1e-151 538.5 694 48.3
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 9.2e-151 538.1 587 51.3
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 2.7e-150 536.6 671 48.1
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 1.0e-149 534.6 614 50.7
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 1.0e-149 534.6 642 51.2
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.9e-148 530.4 703 49.2
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.6e-147 527.3 716 46.6
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 2.8e-147 526.6 666 48.3
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 3.6e-147 526.2 685 49.2
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 1.1e-146 524.6 676 48.2
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 2.4e-146 523.5 696 46.4
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 2.6e-145 520.0 687 47.0
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 1.7e-144 517.3 638 47.8
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 2.4e-143 513.5 604 50.7
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 4.2e-143 512.7 766 43.7
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 9.0e-138 495.0 695 44.7
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 2.4e-135 486.9 626 46.5
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 1.3e-133 481.1 685 46.0
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.9e-132 477.2 677 43.6
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 4.9e-128 462.6 609 46.3
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 6.4e-128 462.2 648 45.5
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 2.1e-126 457.2 673 43.8
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 1.0e-120 438.3 675 44.3
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 3.0e-109 400.2 664 40.1
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 5.1e-109 399.4 646 42.4
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 2.5e-108 397.1 658 40.6
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 3.8e-96 356.7 430 50.7
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 9.4e-95 352.1 485 45.2
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 5.9e-89 332.8 617 37.8
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 1.3e-88 331.6 675 36.6
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 2.3e-85 320.9 601 38.6
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 7.0e-74 282.7 632 34.2
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 1.2e-68 265.4 598 33.4
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 8.3e-67 259.2 641 32.4
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 1.6e-57 228.4 678 30.1
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 8.9e-53 212.6 235 52.3
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.3e-48 198.7 311 39.5
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 7.3e-47 193.0 223 49.3
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.3e-45 188.0 183 57.9
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.1e-42 179.1 181 56.9
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 1.6e-38 165.2 488 29.7
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 2.3e-37 161.4 723 28.4
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 1.2e-30 139.0 132 58.3
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 2.0e-28 131.7 143 53.8
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 2.2e-27 128.3 97 70.1
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 6.6e-24 116.7 636 23.6
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 6.2e-22 110.2 106 52.8
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 8.4e-11 73.2 117 40.2
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 8.4e-11 73.2 117 40.2
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 8.4e-11 73.2 117 40.2
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 3.5e-09 67.8 70 42.9
Zm00001eb139230 Zea mays HOM05D005204 ORTHO05D006037 3.5e-09 67.8 113 38.9
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.3e-08 65.1 70 50.0
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 8.7e-08 63.2 60 51.7
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.5e-07 61.6 76 50.0


User provided reference genes

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