Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 1.9e-153 545.8 276 100.0
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 2.4e-148 528.9 276 96.7
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 4.3e-113 411.8 225 90.2
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 9.5e-113 410.6 225 89.3
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.0e-110 402.9 227 88.1
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 1.8e-108 396.4 226 87.2
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 5.4e-108 394.8 223 87.0
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 7.0e-108 394.4 223 86.5
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 7.0e-108 394.4 224 87.1
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 9.2e-108 394.0 221 87.3
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.2e-107 393.7 223 87.0
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 2.0e-107 392.9 246 81.7
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 2.7e-107 392.5 225 86.2
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 4.6e-107 391.7 221 87.3
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 3.0e-106 389.0 262 75.6
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 4.3e-105 385.2 218 86.7
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 5.6e-105 384.8 242 80.6
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 7.3e-105 384.4 217 87.1
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.2e-104 383.6 221 84.2
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.6e-104 383.3 223 84.8
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 2.1e-104 382.9 216 86.6
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 4.7e-104 381.7 213 85.9
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.4e-103 380.2 222 82.4
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 1.8e-103 379.8 221 84.6
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 2.3e-103 379.4 223 83.4
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 2.3e-103 379.4 222 84.7
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.3e-103 379.4 214 86.9
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 3.1e-103 379.0 225 83.1
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 3.1e-103 379.0 222 84.7
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 3.1e-103 379.0 222 84.7
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 3.1e-103 379.0 216 84.7
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 5.2e-103 378.3 213 85.9
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 8.9e-103 377.5 221 83.7
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.2e-102 377.1 222 84.7
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 1.5e-102 376.7 212 86.3
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 2.0e-102 376.3 221 83.3
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 2.6e-102 375.9 221 82.4
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 3.4e-102 375.6 213 85.0
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 4.4e-102 375.2 215 85.6
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 5.8e-102 374.8 221 82.8
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 7.5e-102 374.4 223 84.3
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 7.5e-102 374.4 210 85.7
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 9.8e-102 374.0 216 86.6
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.7e-101 373.2 221 85.1
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.9e-101 372.5 221 83.7
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 3.7e-101 372.1 221 83.7
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 3.7e-101 372.1 216 82.9
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 4.9e-101 371.7 223 80.3
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 4.9e-101 371.7 223 80.3
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 6.4e-101 371.3 216 82.9
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 6.4e-101 371.3 215 84.2
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 8.3e-101 370.9 221 82.4
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 8.3e-101 370.9 215 83.7
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.4e-100 370.2 217 84.3
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.9e-100 369.8 225 80.9
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.4e-100 369.4 216 81.9
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 2.4e-100 369.4 216 81.9
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 2.4e-100 369.4 217 83.4
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 3.2e-100 369.0 216 81.9
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 4.1e-100 368.6 216 82.9
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 5.4e-100 368.2 221 81.9
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 5.4e-100 368.2 227 81.1
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 5.4e-100 368.2 225 79.1
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.0e-100 367.9 216 81.5
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 9.2e-100 367.5 216 81.5
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.2e-99 367.1 231 77.5
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 1.2e-99 367.1 216 82.4
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 1.6e-99 366.7 221 80.5
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 2.0e-99 366.3 216 81.9
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 4.6e-99 365.2 218 82.1
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 7.8e-99 364.4 216 80.6
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 7.8e-99 364.4 219 81.7
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.3e-98 363.6 216 81.9
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 1.3e-98 363.6 225 78.7
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.7e-98 363.2 218 82.1
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 3.0e-98 362.5 215 82.8
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 6.6e-98 361.3 233 75.1
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.5e-97 359.4 218 80.7
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 1.1e-95 354.0 228 79.8
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.1e-95 354.0 215 80.5
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 2.3e-95 352.8 221 76.5
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 4.0e-95 352.1 266 68.4
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 6.8e-95 351.3 266 68.4
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 8.9e-95 350.9 223 77.6
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 1.4e-92 343.6 210 77.6
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 1.4e-92 343.6 209 79.9
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 1.4e-92 343.6 233 73.8
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.4e-92 343.6 217 78.8
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 5.4e-92 341.7 216 76.4
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 1.2e-91 340.5 224 73.7
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.1e-91 339.7 216 75.0
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 2.1e-91 339.7 221 73.8
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 4.6e-91 338.6 227 75.8
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 1.0e-90 337.4 216 75.9
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 1.0e-90 337.4 216 75.9
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.7e-90 336.7 218 74.8
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 1.7e-90 336.7 216 74.5
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.3e-90 336.3 218 75.2
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 2.3e-90 336.3 216 74.5
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 2.3e-90 336.3 216 74.5
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 2.3e-90 336.3 216 74.5
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 3.0e-90 335.9 187 87.2
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 5.1e-90 335.1 216 74.1
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 5.1e-90 335.1 216 74.1
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 5.1e-90 335.1 221 74.7
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.6e-83 313.5 223 68.2
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 6.0e-83 311.6 213 70.9
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.9e-81 306.6 215 68.8
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 2.5e-81 306.2 211 71.1
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 2.1e-80 303.1 216 67.6
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 5.2e-79 298.5 213 67.6
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 9.0e-79 297.7 220 66.8
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.0e-78 296.6 182 79.1
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.6e-78 296.2 212 66.5
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.3e-74 283.9 180 75.6
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.7e-67 259.6 216 61.1
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.9e-65 253.4 141 87.9
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.2e-59 234.2 128 88.3
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.0e-58 231.1 125 88.8
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 2.3e-58 229.9 129 85.3
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 5.1e-58 228.8 232 50.9
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 1.6e-56 223.8 132 84.8
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 2.8e-56 223.0 122 87.7
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 2.3e-50 203.4 157 66.9
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 9.4e-44 181.4 124 71.0
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 6.1e-43 178.7 129 71.3
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 2.5e-41 173.3 103 79.6
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.5e-41 173.3 115 73.0
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.7e-40 170.6 95 85.3
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.0e-37 161.4 89 89.9
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.0e-34 151.4 95 77.9
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.8e-32 142.5 91 72.5
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 4.8e-32 142.5 164 45.1
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 3.5e-30 136.3 230 38.7
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 8.5e-29 131.7 94 68.1
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 3.2e-28 129.8 77 79.2
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 4.2e-28 129.4 189 37.6
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 2.7e-27 126.7 200 40.0
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.8e-26 124.0 189 36.5
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 3.0e-26 123.2 181 37.6
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.5e-25 120.9 219 34.2
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 2.8e-24 116.7 198 37.4
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 8.2e-24 115.2 73 76.7
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 3.1e-23 113.2 88 67.0
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 4.1e-23 112.8 68 79.4
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 4.1e-23 112.8 71 78.9
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 1.2e-22 111.3 63 81.0
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.9e-21 106.7 64 75.0
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 5.0e-21 105.9 96 60.4
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 1.5e-20 104.4 63 81.0
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 1.9e-20 104.0 194 34.0
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.2e-20 103.2 207 33.8
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 2.3e-18 97.1 58 81.0
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 5.2e-18 95.9 69 66.7
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 8.8e-18 95.1 170 31.8
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 2.0e-17 94.0 59 78.0
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 2.8e-16 90.1 59 76.3
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 6.3e-16 89.0 68 61.8
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.8e-15 87.4 46 82.6
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 2.2e-13 80.5 87 54.0
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 1.5e-12 77.8 87 51.7
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 2.5e-12 77.0 68 54.4
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 4.2e-12 76.3 65 55.4
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 5.5e-12 75.9 64 56.2
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 5.5e-12 75.9 66 57.6
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 1.6e-11 74.3 59 59.3
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 3.4e-09 66.6 39 82.1
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 3.4e-09 66.6 57 56.1
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 9.8e-09 65.1 48 64.6


User provided reference genes

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